Wall clock time and date at job start Mon Mar 30 2020 02:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.46862 * 2 1 4 4 C 1.50703 * 109.47230 * 240.00104 * 2 1 3 5 5 H 1.08005 * 119.99876 * 239.99714 * 4 2 1 6 6 C 1.37875 * 119.99989 * 59.99990 * 4 2 1 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47285 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99722 * 8 6 4 11 11 H 1.48500 * 109.46790 * 239.99650 * 8 6 4 12 12 N 1.46906 * 109.47378 * 119.99897 * 2 1 3 13 13 C 1.46824 * 110.99680 * 59.68779 * 12 2 1 14 14 C 1.53306 * 109.39701 * 170.24579 * 13 12 2 15 15 C 1.51438 * 108.24134 * 53.79582 * 14 13 12 16 16 O 1.20759 * 121.10942 * 130.99202 * 15 14 13 17 17 C 1.51438 * 117.77445 * 310.96931 * 15 14 13 18 18 C 1.46822 * 110.99826 * 295.00288 * 12 2 1 19 19 H 1.09004 * 109.46862 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.46998 * 299.99522 * 1 2 3 21 21 H 1.08992 * 109.47715 * 60.00053 * 1 2 3 22 22 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 23 23 H 1.09001 * 109.48435 * 290.22270 * 13 12 2 24 24 H 1.09002 * 109.48347 * 50.27223 * 13 12 2 25 25 H 1.08994 * 109.71113 * 294.10526 * 14 13 12 26 26 H 1.09002 * 109.74358 * 173.49664 * 14 13 12 27 27 H 1.08999 * 109.70843 * 289.34166 * 17 15 14 28 28 H 1.09001 * 109.70603 * 168.71372 * 17 15 14 29 29 H 1.09000 * 109.48228 * 309.72721 * 18 12 2 30 30 H 1.08994 * 109.48802 * 69.75937 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0079 9 1 3.1464 -2.2869 -3.6038 10 1 1.1660 -1.5867 -4.8161 11 1 3.1465 -0.1872 -4.8164 12 7 2.0197 -0.6925 1.1995 13 6 1.5428 -2.0806 1.2371 14 6 2.2634 -2.8363 2.3596 15 6 2.0831 -2.0584 3.6464 16 8 1.7179 -2.6045 4.6596 17 6 2.3766 -0.5730 3.6201 18 6 1.6489 0.0388 2.4174 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8899 22 1 0.7081 1.1608 -3.4844 23 1 0.4688 -2.0912 1.4229 24 1 1.7516 -2.5628 0.2821 25 1 3.3247 -2.9182 2.1252 26 1 1.8330 -3.8318 2.4686 27 1 3.4501 -0.4121 3.5209 28 1 2.0185 -0.1112 4.5402 29 1 1.9341 1.0857 2.3139 30 1 0.5719 -0.0312 2.5699 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095831162.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:23 Heat of formation + Delta-G solvation = -57.298944 kcal Electronic energy + Delta-G solvation = -12931.956590 eV Core-core repulsion = 10726.289431 eV Total energy + Delta-G solvation = -2205.667159 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.90933 -38.85574 -35.26958 -32.83157 -32.19025 -29.20414 -27.31683 -24.57294 -24.20137 -21.72922 -19.70093 -18.20770 -17.32996 -16.43699 -16.35914 -15.94621 -15.73583 -15.49553 -14.66269 -14.51217 -13.77045 -13.21691 -13.08480 -13.01159 -12.70986 -12.59739 -12.39973 -12.37371 -12.04249 -11.98178 -11.48471 -10.86451 -10.47816 -10.37286 -8.92131 -8.08312 -6.18507 0.93341 1.44534 1.47696 1.58059 2.45540 3.12726 3.21842 3.35459 3.91885 4.08414 4.13523 4.31098 4.49780 4.66647 4.73050 4.85266 4.89753 4.92884 5.02158 5.06358 5.13459 5.22774 5.57007 5.73523 5.79065 6.19933 6.39543 6.52581 6.71939 6.95067 7.50819 8.98102 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058678 B = 0.009868 C = 0.009043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.067580 B = 2836.882579 C = 3095.725502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.512 4.512 5 H 0.064 0.936 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.957 3.043 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.539 5.539 13 C 0.069 3.931 14 C -0.158 4.158 15 C 0.369 3.631 16 O -0.501 6.501 17 C -0.154 4.154 18 C 0.058 3.942 19 H 0.029 0.971 20 H 0.025 0.975 21 H 0.061 0.939 22 H 0.260 0.740 23 H 0.021 0.979 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 -3.410 7.162 8.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.108 3.892 3 H 0.032 0.968 4 C -0.550 4.550 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.189 1.189 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.263 5.263 13 C -0.059 4.059 14 C -0.196 4.196 15 C 0.248 3.752 16 O -0.378 6.378 17 C -0.192 4.192 18 C -0.070 4.070 19 H 0.048 0.952 20 H 0.044 0.956 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.101 0.899 25 H 0.136 0.864 26 H 0.114 0.886 27 H 0.139 0.861 28 H 0.119 0.881 29 H 0.101 0.899 30 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.640 -3.594 7.533 8.754 hybrid contribution -0.847 -0.025 -1.098 1.387 sum 1.794 -3.619 6.434 7.597 Atomic orbital electron populations 1.22240 1.00548 0.99121 1.00106 1.19077 0.89817 0.93354 0.86923 0.96762 1.21438 1.30428 1.12520 0.90630 0.91807 1.25674 0.95462 0.95793 1.01849 1.70017 1.37975 1.24293 1.23882 0.85517 0.77940 0.78739 0.79485 1.18856 1.21131 1.21043 1.62057 1.60026 1.01983 1.02225 1.21903 0.95565 0.89756 0.98687 1.22407 1.04709 0.99421 0.93061 1.25308 0.69219 0.92404 0.88286 1.90354 1.36730 1.74225 1.36537 1.22358 1.04529 0.92859 0.99415 1.22033 0.96836 0.98834 0.89345 0.95176 0.95603 0.91986 0.93088 0.96108 0.89893 0.86362 0.88570 0.86067 0.88092 0.89894 0.95662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.49 8.30 71.98 0.60 -6.89 16 2 C 0.22 10.24 2.34 44.17 0.10 10.34 16 3 H 0.01 0.76 8.04 -2.38 -0.02 0.75 16 4 C -0.51 -26.46 7.80 25.60 0.20 -26.26 16 5 H 0.06 3.25 6.76 -2.91 -0.02 3.23 16 6 C 0.01 0.56 5.30 84.65 0.45 1.01 16 7 N -0.92 -51.37 11.32 21.45 0.24 -51.13 16 8 Si 0.96 42.15 29.54 68.60 2.03 44.17 16 9 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.54 -20.85 4.55 -874.54 -3.98 -24.83 16 13 C 0.07 2.45 4.60 86.42 0.40 2.85 16 14 C -0.16 -4.48 6.35 30.19 0.19 -4.29 16 15 C 0.37 10.97 6.80 29.57 0.20 11.17 16 16 O -0.50 -17.43 17.91 -1.45 -0.03 -17.45 16 17 C -0.15 -4.03 6.35 30.18 0.19 -3.84 16 18 C 0.06 1.87 4.95 86.42 0.43 2.30 16 19 H 0.03 1.35 6.63 -2.38 -0.02 1.33 16 20 H 0.03 1.07 6.75 -2.39 -0.02 1.05 16 21 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 22 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 23 H 0.02 0.76 6.82 -2.39 -0.02 0.74 16 24 H 0.08 3.19 6.23 -2.39 -0.01 3.18 16 25 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 26 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 28 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.08 2.61 8.00 -2.39 -0.02 2.59 16 30 H 0.03 0.84 6.90 -2.39 -0.02 0.83 16 Total: -1.00 -58.41 240.51 2.14 -56.26 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 1.12 Total: 6.57 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 2.76 Total: -13.60 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -3.74 Total: -75.96 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.03 Total: -17.45 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -58.41 2.14 -56.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095831162.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.036 kcal (2) G-P(sol) polarization free energy of solvation -58.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds