Wall clock time and date at job start Mon Mar 30 2020 02:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.40219 * 2 1 4 4 C 1.53069 * 109.40236 * 240.16920 * 2 1 3 5 5 C 1.53348 * 108.45717 * 190.95114 * 4 2 1 6 6 C 1.52980 * 108.64659 * 67.49790 * 5 4 2 7 7 N 1.45762 * 110.51709 * 309.30503 * 6 5 4 8 8 C 1.46494 * 117.94541 * 199.05502 * 7 6 5 9 9 C 1.50700 * 109.47237 * 269.97874 * 8 7 6 10 10 H 1.08007 * 119.99981 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00327 * 180.02562 * 9 8 7 12 12 N 1.31520 * 119.99836 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00320 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.46931 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47390 * 119.99778 * 13 11 9 16 16 H 1.48503 * 109.46636 * 239.99912 * 13 11 9 17 17 C 1.33351 * 124.10554 * 19.03730 * 7 6 5 18 18 O 1.21283 * 118.24615 * 177.82288 * 17 7 6 19 19 H 1.09006 * 109.47401 * 179.83019 * 1 2 3 20 20 H 1.09005 * 109.47327 * 299.83115 * 1 2 3 21 21 H 1.09000 * 109.47101 * 59.83109 * 1 2 3 22 22 H 1.09002 * 109.67457 * 310.70730 * 4 2 1 23 23 H 1.09004 * 109.67157 * 71.20399 * 4 2 1 24 24 H 1.08996 * 109.60494 * 187.30428 * 5 4 2 25 25 H 1.08995 * 109.60644 * 307.80001 * 5 4 2 26 26 H 1.09001 * 109.30024 * 188.97847 * 6 5 4 27 27 H 1.08998 * 109.10090 * 69.51252 * 6 5 4 28 28 H 1.09001 * 109.47266 * 29.97952 * 8 7 6 29 29 H 1.08996 * 109.46951 * 149.98023 * 8 7 6 30 30 H 0.97001 * 119.99752 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8920 1.0281 0.0000 4 6 2.0384 -0.7182 -1.2525 5 6 3.5467 -0.9497 -1.1007 6 6 3.7757 -1.9597 0.0253 7 7 3.0492 -1.5613 1.2245 8 6 3.4664 -2.1400 2.5040 9 6 2.7025 -3.4152 2.7515 10 1 1.9788 -3.7603 2.0278 11 6 2.9273 -4.1413 3.9017 12 7 3.8082 -3.7209 4.7832 13 14 1.9808 -5.7224 4.2083 14 1 1.0564 -5.9737 3.0736 15 1 2.9342 -6.8543 4.3306 16 1 1.1990 -5.5956 5.4645 17 6 2.0288 -0.7028 1.2300 18 8 1.4742 -0.4770 2.2847 19 1 -0.3634 -1.0277 -0.0030 20 1 -0.3634 0.5112 0.8915 21 1 -0.3633 0.5165 -0.8885 22 1 1.5290 -1.6759 -1.3586 23 1 1.8484 -0.1021 -2.1314 24 1 3.9522 -1.3421 -2.0333 25 1 4.0380 -0.0089 -0.8527 26 1 4.8409 -2.0129 0.2504 27 1 3.4264 -2.9401 -0.2985 28 1 4.5343 -2.3562 2.4739 29 1 3.2615 -1.4320 3.3070 30 1 3.9666 -4.2320 5.5923 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133762054.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:59 Heat of formation + Delta-G solvation = -74.464388 kcal Electronic energy + Delta-G solvation = -12929.405683 eV Core-core repulsion = 10722.994175 eV Total energy + Delta-G solvation = -2206.411508 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.32474 -37.30275 -36.17893 -34.48837 -31.80154 -29.22542 -27.55500 -25.46029 -23.33674 -22.84886 -19.48873 -18.62176 -17.44013 -17.36087 -16.37835 -16.18896 -15.38771 -14.92984 -14.30005 -14.11623 -14.06893 -13.65563 -13.33319 -13.02460 -12.82758 -12.60163 -12.27463 -12.22859 -12.02964 -11.86136 -11.58597 -11.48625 -10.67033 -10.35212 -9.45644 -8.24959 -6.39480 1.33288 1.36236 1.48190 1.87955 2.31810 2.46472 3.04277 3.70644 3.88043 3.90877 4.00642 4.40602 4.52618 4.59494 4.80864 4.83677 4.89442 4.96284 5.06039 5.14416 5.15965 5.24820 5.31462 5.42920 5.53852 5.80487 6.04147 6.67821 6.88488 7.26831 7.52605 8.82924 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044402 B = 0.010655 C = 0.010048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.449678 B = 2627.216753 C = 2786.062988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 H 0.115 0.885 4 C -0.110 4.110 5 C -0.125 4.125 6 C 0.106 3.894 7 N -0.596 5.596 8 C 0.251 3.749 9 C -0.540 4.540 10 H 0.049 0.951 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.970 3.030 14 H -0.268 1.268 15 H -0.266 1.266 16 H -0.281 1.281 17 C 0.491 3.509 18 O -0.613 6.613 19 H 0.041 0.959 20 H 0.043 0.957 21 H 0.101 0.899 22 H 0.063 0.937 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.022 0.978 29 H -0.002 1.002 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.389 4.696 -15.317 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.120 4.120 3 H 0.132 0.868 4 C -0.148 4.148 5 C -0.162 4.162 6 C -0.016 4.016 7 N -0.326 5.326 8 C 0.129 3.871 9 C -0.578 4.578 10 H 0.067 0.933 11 C -0.194 4.194 12 N -0.569 5.569 13 Si 0.794 3.206 14 H -0.192 1.192 15 H -0.191 1.191 16 H -0.206 1.206 17 C 0.281 3.719 18 O -0.496 6.496 19 H 0.060 0.940 20 H 0.062 0.938 21 H 0.120 0.880 22 H 0.081 0.919 23 H 0.131 0.869 24 H 0.135 0.865 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.040 0.960 29 H 0.016 0.984 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.560 4.761 -14.658 15.491 hybrid contribution -0.216 -0.882 1.071 1.404 sum -1.777 3.880 -13.587 14.241 Atomic orbital electron populations 1.21631 0.92285 1.01819 1.02947 1.21311 0.98209 1.00750 0.91739 0.86758 1.21751 0.95369 1.01152 0.96505 1.21930 0.96975 0.99092 0.98217 1.21602 0.96392 0.99040 0.84605 1.47640 1.32543 1.42536 1.09900 1.18824 0.94333 0.92366 0.81584 1.21661 1.22840 1.07738 1.05574 0.93290 1.25901 0.96274 1.01919 0.95269 1.70065 1.35305 1.40756 1.10756 0.85329 0.78542 0.78629 0.78064 1.19219 1.19083 1.20635 1.21105 0.79488 0.79550 0.91800 1.90631 1.57593 1.66289 1.35099 0.94006 0.93806 0.88001 0.91871 0.86853 0.86514 0.90600 0.90936 0.92408 0.95997 0.98434 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.88 71.98 0.64 -2.93 16 2 C -0.10 -2.92 2.95 -11.68 -0.03 -2.96 16 3 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 4 C -0.11 -2.34 5.33 30.73 0.16 -2.18 16 5 C -0.12 -2.65 6.03 30.70 0.19 -2.47 16 6 C 0.11 3.47 6.39 86.51 0.55 4.02 16 7 N -0.60 -27.11 2.80 -830.86 -2.32 -29.43 16 8 C 0.25 14.35 4.95 85.63 0.42 14.77 16 9 C -0.54 -32.71 9.37 25.60 0.24 -32.47 16 10 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.01 0.30 5.46 84.65 0.46 0.76 16 12 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 13 Si 0.97 46.40 29.54 68.60 2.03 48.42 16 14 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 17 C 0.49 22.01 7.03 87.72 0.62 22.63 16 18 O -0.61 -34.46 15.41 -3.04 -0.05 -34.51 16 19 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 20 H 0.04 1.40 7.79 -2.38 -0.02 1.38 16 21 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 23 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 24 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.08 1.54 8.12 -2.39 -0.02 1.52 16 26 H 0.07 2.29 7.92 -2.39 -0.02 2.27 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.02 1.26 7.86 -2.39 -0.02 1.24 16 29 H 0.00 -0.16 7.20 -2.39 -0.02 -0.18 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -77.43 250.71 4.29 -73.14 By element: Atomic # 1 Polarization: -0.18 SS G_CDS: 1.10 Total: 0.92 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 3.25 Total: -0.82 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -2.04 Total: -87.15 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.05 Total: -34.51 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -77.43 4.29 -73.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133762054.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.325 kcal (2) G-P(sol) polarization free energy of solvation -77.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds