Wall clock time and date at job start Mon Mar 30 2020 02:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.39898 * 2 1 4 4 C 1.53062 * 109.40247 * 119.82804 * 2 1 3 5 5 C 1.53354 * 108.42523 * 168.94529 * 4 2 1 6 6 C 1.52921 * 108.67152 * 292.46736 * 5 4 2 7 7 N 1.45758 * 110.31891 * 50.85576 * 6 5 4 8 8 C 1.46504 * 117.94299 * 160.81910 * 7 6 5 9 9 C 1.50705 * 109.46876 * 90.00138 * 8 7 6 10 10 H 1.08000 * 120.00255 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99869 * 180.02562 * 9 8 7 12 12 N 1.31508 * 119.99694 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 119.99785 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47239 * 90.00567 * 13 11 9 15 15 H 1.48505 * 109.47023 * 210.00008 * 13 11 9 16 16 H 1.48501 * 109.47503 * 330.00277 * 13 11 9 17 17 C 1.33085 * 124.30989 * 340.59757 * 7 6 5 18 18 O 1.21287 * 118.32629 * 182.44788 * 17 7 6 19 19 H 1.09007 * 109.46963 * 300.16746 * 1 2 3 20 20 H 1.08995 * 109.47421 * 60.17377 * 1 2 3 21 21 H 1.09004 * 109.46746 * 180.17486 * 1 2 3 22 22 H 1.08994 * 109.67869 * 49.21088 * 4 2 1 23 23 H 1.09000 * 109.70562 * 288.69148 * 4 2 1 24 24 H 1.09003 * 109.60301 * 172.71536 * 5 4 2 25 25 H 1.08993 * 109.60312 * 52.22287 * 5 4 2 26 26 H 1.09002 * 109.29978 * 171.06570 * 6 5 4 27 27 H 1.08998 * 109.30064 * 290.64656 * 6 5 4 28 28 H 1.08998 * 109.46968 * 210.00099 * 8 7 6 29 29 H 1.08999 * 109.47040 * 330.00670 * 8 7 6 30 30 H 0.97008 * 119.99587 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0281 0.0000 4 6 2.0385 -0.7181 1.2524 5 6 3.5463 -0.9516 1.0988 6 6 3.7730 -1.9627 -0.0258 7 7 3.0469 -1.5590 -1.2235 8 6 3.4624 -2.1347 -2.5050 9 6 2.6958 -3.4077 -2.7558 10 1 1.9719 -3.7536 -2.0328 11 6 2.9194 -4.1315 -3.9079 12 7 2.2500 -5.2421 -4.1270 13 14 4.1720 -3.5336 -5.1581 14 1 5.5041 -4.1056 -4.8365 15 1 3.7614 -3.9690 -6.5172 16 1 4.2462 -2.0511 -5.1145 17 6 2.0271 -0.7039 -1.2299 18 8 1.4715 -0.4787 -2.2842 19 1 -0.3633 0.5165 0.8885 20 1 -0.3634 0.5111 -0.8915 21 1 -0.3633 -1.0277 0.0031 22 1 1.5280 -1.6751 1.3595 23 1 1.8504 -0.1016 2.1314 24 1 3.9524 -1.3443 2.0310 25 1 4.0384 -0.0114 0.8500 26 1 4.8380 -2.0177 -0.2515 27 1 3.4217 -2.9433 0.2951 28 1 3.2584 -1.4239 -3.3057 29 1 4.5298 -2.3531 -2.4761 30 1 2.4071 -5.7511 -4.9377 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133762258.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:01 Heat of formation + Delta-G solvation = -71.150791 kcal Electronic energy + Delta-G solvation = -12961.100968 eV Core-core repulsion = 10754.833148 eV Total energy + Delta-G solvation = -2206.267820 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.40277 -37.34055 -36.20989 -34.51823 -31.93205 -29.77933 -27.59559 -25.16427 -23.30948 -22.77137 -19.50548 -19.05784 -17.50143 -17.42439 -16.34172 -16.16856 -15.37829 -14.91297 -14.59908 -14.21677 -14.07075 -13.80597 -13.47129 -13.13023 -12.82589 -12.50716 -12.25902 -12.11207 -12.00668 -11.81165 -11.69034 -11.50096 -10.84053 -10.41054 -9.45286 -8.36456 -6.41363 1.29010 1.34320 1.45604 1.83672 2.29468 2.36414 2.97415 3.67700 3.86792 3.89038 3.99191 4.38091 4.49926 4.57807 4.71775 4.78464 4.82242 4.85903 4.96396 5.05251 5.14931 5.16796 5.28973 5.40311 5.46477 5.58337 6.20479 6.58459 6.80524 7.19688 7.46106 8.80956 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047040 B = 0.011088 C = 0.010378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.091022 B = 2524.735077 C = 2697.326544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.121 0.879 4 C -0.113 4.113 5 C -0.124 4.124 6 C 0.104 3.896 7 N -0.593 5.593 8 C 0.214 3.786 9 C -0.535 4.535 10 H 0.023 0.977 11 C 0.008 3.992 12 N -0.946 5.946 13 Si 0.952 3.048 14 H -0.248 1.248 15 H -0.280 1.280 16 H -0.258 1.258 17 C 0.493 3.507 18 O -0.610 6.610 19 H 0.102 0.898 20 H 0.045 0.955 21 H 0.035 0.965 22 H 0.056 0.944 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.050 0.950 28 H 0.020 0.980 29 H 0.048 0.952 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.766 10.692 12.842 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.119 4.119 3 H 0.139 0.861 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.018 4.018 7 N -0.322 5.322 8 C 0.092 3.908 9 C -0.573 4.573 10 H 0.041 0.959 11 C -0.189 4.189 12 N -0.587 5.587 13 Si 0.774 3.226 14 H -0.172 1.172 15 H -0.205 1.205 16 H -0.182 1.182 17 C 0.282 3.718 18 O -0.493 6.493 19 H 0.120 0.880 20 H 0.064 0.936 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.132 0.868 24 H 0.134 0.866 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.484 10.654 12.234 16.831 hybrid contribution 0.008 -0.578 -1.150 1.287 sum 4.492 10.076 11.084 15.638 Atomic orbital electron populations 1.21644 0.92625 1.01532 1.03053 1.21309 0.97968 1.00998 0.91675 0.86136 1.21763 0.95709 1.00916 0.96668 1.21919 0.96673 0.99294 0.98246 1.21652 0.96833 0.98710 0.84567 1.47389 1.32775 1.42424 1.09629 1.19410 0.95289 0.92393 0.83745 1.21500 1.22860 1.07150 1.05798 0.95896 1.25906 0.98522 0.94595 0.99903 1.70058 1.43650 1.17017 1.27930 0.85650 0.79470 0.79614 0.77846 1.17208 1.20544 1.18187 1.21014 0.79270 0.79617 0.91858 1.90632 1.57221 1.66467 1.35016 0.87962 0.93614 0.94593 0.92539 0.86808 0.86641 0.89888 0.89653 0.93181 0.96180 0.93379 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 8.88 71.98 0.64 -3.06 16 2 C -0.10 -2.85 2.95 -11.69 -0.03 -2.88 16 3 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 4 C -0.11 -2.40 5.33 30.73 0.16 -2.24 16 5 C -0.12 -2.48 6.02 30.69 0.18 -2.30 16 6 C 0.10 3.25 6.40 86.49 0.55 3.80 16 7 N -0.59 -25.59 2.79 -831.35 -2.32 -27.91 16 8 C 0.21 11.04 4.01 85.63 0.34 11.39 16 9 C -0.53 -33.03 9.92 25.60 0.25 -32.77 16 10 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 11 C 0.01 0.52 5.47 84.66 0.46 0.98 16 12 N -0.95 -61.57 13.96 21.45 0.30 -61.27 16 13 Si 0.95 45.87 27.47 68.60 1.88 47.76 16 14 H -0.25 -10.82 7.11 99.48 0.71 -10.11 16 15 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 16 H -0.26 -12.08 6.54 99.48 0.65 -11.43 16 17 C 0.49 21.39 7.01 87.75 0.62 22.00 16 18 O -0.61 -33.14 15.39 -3.05 -0.05 -33.18 16 19 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 20 H 0.04 1.47 7.79 -2.39 -0.02 1.45 16 21 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 23 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.08 1.48 8.12 -2.39 -0.02 1.46 16 26 H 0.09 2.35 7.92 -2.39 -0.02 2.34 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.02 1.13 6.25 -2.39 -0.01 1.11 16 29 H 0.05 2.22 7.29 -2.39 -0.02 2.21 16 30 H 0.27 16.17 8.31 -92.70 -0.77 15.40 16 Total: -1.00 -80.33 247.04 4.05 -76.28 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.05 Total: 3.41 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 3.18 Total: -5.09 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -2.02 Total: -89.18 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.05 Total: -33.18 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.76 kcal Total: -80.33 4.05 -76.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133762258.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.130 kcal (2) G-P(sol) polarization free energy of solvation -80.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds