Wall clock time and date at job start Mon Mar 30 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47326 * 2 1 4 4 C 1.53001 * 109.46794 * 119.99594 * 2 1 3 5 5 H 1.08997 * 110.89106 * 302.35823 * 4 2 1 6 6 C 1.54630 * 110.96625 * 178.54533 * 4 2 1 7 7 C 1.51286 * 104.19461 * 217.08620 * 6 4 2 8 8 O 1.21293 * 124.94101 * 196.27928 * 7 6 4 9 9 N 1.34414 * 110.11658 * 16.24907 * 7 6 4 10 10 C 1.37105 * 124.35299 * 180.40770 * 9 7 6 11 11 H 1.07993 * 120.00310 * 148.55790 * 10 9 7 12 12 C 1.38953 * 119.99662 * 328.56065 * 10 9 7 13 13 N 1.31410 * 120.00152 * 331.74245 * 12 10 9 14 14 Si 1.86798 * 119.99946 * 151.74529 * 12 10 9 15 15 H 1.48505 * 109.47214 * 179.97438 * 14 12 10 16 16 H 1.48507 * 109.47035 * 60.00045 * 14 12 10 17 17 H 1.48492 * 109.47210 * 299.99977 * 14 12 10 18 18 C 1.46763 * 111.30266 * 0.67706 * 9 7 6 19 19 H 1.08999 * 109.46718 * 300.00219 * 1 2 3 20 20 H 1.08998 * 109.46657 * 60.00218 * 1 2 3 21 21 H 1.08995 * 109.47178 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47198 * 239.99555 * 2 1 3 23 23 H 1.08999 * 109.47345 * 59.99645 * 3 2 1 24 24 H 1.08996 * 109.47264 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46885 * 299.99834 * 3 2 1 26 26 H 1.08993 * 110.48667 * 98.40885 * 6 4 2 27 27 H 1.09000 * 110.48963 * 335.76139 * 6 4 2 28 28 H 0.97006 * 120.00085 * 355.35010 * 13 12 10 29 29 H 1.09004 * 110.24507 * 101.71236 * 18 9 7 30 30 H 1.08999 * 110.25058 * 223.71818 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6557 -0.2502 2.1540 6 6 3.5853 -0.7732 1.2661 7 6 3.9044 -2.1307 1.8529 8 8 4.9849 -2.4597 2.2951 9 7 2.8163 -2.9188 1.8134 10 6 2.7777 -4.2083 2.2776 11 1 1.8618 -4.6074 2.6875 12 6 3.9171 -5.0015 2.2206 13 7 4.8188 -4.7904 1.2883 14 14 4.1671 -6.3681 3.4694 15 1 5.4506 -7.0622 3.1933 16 1 3.0483 -7.3396 3.3706 17 1 4.2009 -5.7893 4.8364 18 6 1.6765 -2.2238 1.2036 19 1 -0.3633 0.5139 0.8900 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 1.8934 -0.5139 -0.8899 23 1 1.6768 1.9563 0.8899 24 1 3.1301 1.4424 -0.0005 25 1 1.6768 1.9562 -0.8901 26 1 3.9868 0.0192 1.8976 27 1 3.9808 -0.6928 0.2536 28 1 4.6582 -4.1264 0.5996 29 1 1.5428 -2.5511 0.1725 30 1 0.7698 -2.4089 1.7795 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133767886.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:33 Heat of formation + Delta-G solvation = -47.299988 kcal Electronic energy + Delta-G solvation = -12996.175006 eV Core-core repulsion = 10790.941434 eV Total energy + Delta-G solvation = -2205.233572 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.40286 -36.27706 -34.09220 -32.37143 -29.44498 -27.54440 -25.88561 -24.34080 -21.87185 -19.63075 -19.41646 -16.95484 -15.67974 -15.03415 -14.48466 -13.80587 -13.63805 -13.24708 -13.13971 -12.61048 -12.56709 -12.12186 -11.92343 -11.41827 -11.25800 -10.79992 -10.73752 -10.63979 -10.22422 -10.16585 -10.06269 -9.83988 -8.67944 -8.16245 -7.41751 -6.43569 -3.77895 3.42175 3.52651 3.68089 4.14282 4.41421 4.87670 4.92296 5.03823 5.09298 5.35021 5.51440 5.55891 5.68112 5.70202 5.71884 5.92178 5.98135 6.12698 6.21296 6.27947 6.33967 6.39040 6.43752 6.52770 6.71602 7.77916 8.36160 8.78663 9.17352 9.55212 10.22377 10.88338 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065213 B = 0.010278 C = 0.009409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.256560 B = 2723.741807 C = 2975.087596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.146 4.146 4 C -0.096 4.096 5 H 0.080 0.920 6 C -0.143 4.143 7 C 0.438 3.562 8 O -0.549 6.549 9 N -0.454 5.454 10 C -0.435 4.435 11 H 0.076 0.924 12 C 0.025 3.975 13 N -0.828 5.828 14 Si 1.079 2.921 15 H -0.280 1.280 16 H -0.288 1.288 17 H -0.285 1.285 18 C 0.102 3.898 19 H 0.053 0.947 20 H 0.051 0.949 21 H 0.057 0.943 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.273 0.727 29 H 0.052 0.948 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.168 8.707 -2.757 12.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.203 4.203 4 C -0.115 4.115 5 H 0.098 0.902 6 C -0.184 4.184 7 C 0.226 3.774 8 O -0.430 6.430 9 N -0.176 5.176 10 C -0.560 4.560 11 H 0.094 0.906 12 C -0.189 4.189 13 N -0.458 5.458 14 Si 0.905 3.095 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.212 1.212 18 C -0.022 4.022 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.076 0.924 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.572 7.301 -2.039 10.032 hybrid contribution -1.275 1.299 -0.642 1.930 sum -7.847 8.600 -2.681 11.947 Atomic orbital electron populations 1.21841 0.95301 1.01944 1.01290 1.21114 0.95600 0.96042 0.97677 1.21836 1.01393 0.95837 1.01253 1.22204 0.95499 0.95594 0.98198 0.90151 1.22272 0.95521 0.98581 1.02033 1.20333 0.85829 0.86192 0.85026 1.90617 1.24562 1.77576 1.50289 1.43866 1.09636 1.11667 1.52394 1.19917 1.01708 0.88702 1.45689 0.90569 1.26225 0.92822 1.00934 0.98889 1.70522 1.36817 1.29269 1.09183 0.83395 0.76175 0.74418 0.75498 1.20560 1.21467 1.21186 1.22061 0.91819 0.90681 0.97622 0.92791 0.93013 0.92385 0.91050 0.92809 0.92395 0.93040 0.90213 0.90119 0.91589 0.93006 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.04 37.16 0.34 -1.32 16 2 C -0.09 -1.12 2.27 -90.62 -0.21 -1.33 16 3 C -0.15 -1.66 8.99 37.15 0.33 -1.33 16 4 C -0.10 -1.60 2.70 -88.89 -0.24 -1.83 16 5 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 6 C -0.14 -2.83 5.38 -26.74 -0.14 -2.98 16 7 C 0.44 11.85 6.78 -10.86 -0.07 11.78 16 8 O -0.55 -17.48 15.24 5.55 0.08 -17.39 16 9 N -0.45 -12.06 2.84 -113.51 -0.32 -12.38 16 10 C -0.43 -12.64 9.77 -14.93 -0.15 -12.79 16 11 H 0.08 2.13 7.97 -52.49 -0.42 1.71 16 12 C 0.03 0.75 4.50 -17.47 -0.08 0.67 16 13 N -0.83 -26.40 12.13 55.50 0.67 -25.72 16 14 Si 1.08 26.23 30.00 -169.99 -5.10 21.13 16 15 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.10 2.06 5.97 -3.02 -0.02 2.04 16 19 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.68 7.50 -51.93 -0.39 0.29 16 22 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.68 7.26 -51.93 -0.38 0.31 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.08 1.51 7.78 -51.93 -0.40 1.10 16 28 H 0.27 8.87 7.20 -40.82 -0.29 8.57 16 29 H 0.05 1.02 7.85 -51.93 -0.41 0.61 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 247.55 15.07 3.73 3.73 Total: -1.00 -34.74 247.55 -5.63 -40.38 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.46 Total: -2.65 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.23 Total: -7.09 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.35 Total: -38.10 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.08 Total: -17.39 kcal Atomic # 14 Polarization: 26.23 SS G_CDS: -5.10 Total: 21.13 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -34.74 -5.63 -40.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133767886.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.923 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds