Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47368 * 2 1 4 4 C 1.53002 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.85377 * 51.21363 * 4 3 2 6 6 C 1.54628 * 110.97177 * 287.38037 * 4 3 2 7 7 C 1.51275 * 104.19468 * 217.08328 * 6 4 3 8 8 O 1.21299 * 124.94043 * 196.29260 * 7 6 4 9 9 N 1.34419 * 110.11831 * 16.25140 * 7 6 4 10 10 C 1.37101 * 124.34867 * 180.42810 * 9 7 6 11 11 H 1.07998 * 120.00248 * 14.06128 * 10 9 7 12 12 C 1.38948 * 119.99600 * 194.06105 * 10 9 7 13 13 N 1.31412 * 120.00483 * 8.57465 * 12 10 9 14 14 Si 1.86804 * 119.99759 * 188.57251 * 12 10 9 15 15 H 1.48491 * 109.47384 * 90.00067 * 14 12 10 16 16 H 1.48508 * 109.47030 * 210.00262 * 14 12 10 17 17 H 1.48504 * 109.46901 * 329.99838 * 14 12 10 18 18 C 1.46763 * 111.29907 * 0.41087 * 9 7 6 19 19 H 1.09007 * 109.47153 * 300.00221 * 1 2 3 20 20 H 1.09000 * 109.46977 * 59.99401 * 1 2 3 21 21 H 1.08996 * 109.47634 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46881 * 240.00109 * 2 1 3 23 23 H 1.09007 * 109.47039 * 119.99923 * 2 1 3 24 24 H 1.09007 * 109.47164 * 59.99785 * 3 2 1 25 25 H 1.09000 * 109.47561 * 300.00241 * 3 2 1 26 26 H 1.09000 * 110.48724 * 335.76139 * 6 4 3 27 27 H 1.08996 * 110.48335 * 98.40420 * 6 4 3 28 28 H 0.96995 * 120.00208 * 180.02562 * 13 12 10 29 29 H 1.09002 * 110.24460 * 223.98204 * 18 9 7 30 30 H 1.08992 * 110.24671 * 101.98305 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9584 0.8042 -0.7931 6 6 4.1229 1.0113 1.3789 7 6 5.3481 1.8769 1.5744 8 8 6.2243 1.6674 2.3866 9 7 5.3249 2.9114 0.7164 10 6 6.2992 3.8728 0.6374 11 1 7.2535 3.7153 1.1181 12 6 6.0589 5.0496 -0.0610 13 7 4.8500 5.3173 -0.5014 14 14 7.4543 6.2515 -0.3741 15 1 8.1174 5.9161 -1.6598 16 1 6.9123 7.6325 -0.4422 17 1 8.4424 6.1614 0.7308 18 6 4.1229 2.8794 -0.1250 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8901 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8899 26 1 3.3897 1.2055 2.1617 27 1 4.3988 -0.0431 1.3663 28 1 4.6823 6.1387 -0.9893 29 1 4.3824 3.0944 -1.1617 30 1 3.3891 3.5990 0.2379 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133774119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = -53.735193 kcal Electronic energy + Delta-G solvation = -12704.594689 eV Core-core repulsion = 10499.082066 eV Total energy + Delta-G solvation = -2205.512623 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.18717 -35.81901 -34.48967 -32.56667 -30.42799 -27.21909 -25.84584 -24.17668 -21.32522 -19.84937 -19.11053 -16.95595 -15.75331 -14.97615 -14.58963 -14.25235 -13.70667 -13.32709 -12.83349 -12.74108 -12.26832 -12.14574 -11.71171 -11.41921 -11.07735 -11.02393 -10.91304 -10.46516 -10.39230 -10.20736 -10.10017 -9.85441 -9.07523 -8.30047 -7.75377 -6.34373 -3.84059 3.15812 3.24131 3.29713 3.94102 4.13619 4.91955 5.12480 5.18903 5.20570 5.26763 5.43520 5.57100 5.67233 5.91572 5.94856 6.02144 6.12370 6.18781 6.34685 6.44278 6.48825 6.61220 6.67502 7.06272 7.25239 7.51664 7.98183 8.51716 9.16309 9.36104 10.09233 10.72769 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048140 B = 0.009868 C = 0.008398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.497087 B = 2836.729633 C = 3333.505467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.116 4.116 5 H 0.076 0.924 6 C -0.139 4.139 7 C 0.442 3.558 8 O -0.596 6.596 9 N -0.444 5.444 10 C -0.302 4.302 11 H 0.100 0.900 12 C 0.029 3.971 13 N -0.886 5.886 14 Si 0.929 3.071 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.141 3.859 19 H 0.052 0.948 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.269 0.731 29 H 0.072 0.928 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 -5.500 -2.827 9.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.141 4.141 4 C -0.136 4.136 5 H 0.094 0.906 6 C -0.180 4.180 7 C 0.230 3.770 8 O -0.482 6.482 9 N -0.162 5.162 10 C -0.429 4.429 11 H 0.118 0.882 12 C -0.174 4.174 13 N -0.526 5.526 14 Si 0.756 3.244 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.194 1.194 18 C 0.017 3.983 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.403 -5.346 -2.566 9.485 hybrid contribution 0.494 0.724 -0.318 0.932 sum -6.909 -4.622 -2.883 8.798 Atomic orbital electron populations 1.21779 0.96363 1.01045 1.01707 1.21548 0.95259 0.97459 1.01953 1.21544 0.94165 0.96164 1.02266 1.22409 0.95283 0.98907 0.96959 0.90587 1.22231 0.97932 1.00133 0.97707 1.20366 0.88397 0.84960 0.83320 1.90512 1.41997 1.76046 1.39655 1.43938 1.19443 1.22267 1.30508 1.19627 0.94718 0.95494 1.33063 0.88210 1.25301 0.97386 0.97541 0.97137 1.69909 1.19279 1.25868 1.37510 0.85869 0.80547 0.79020 0.78951 1.20329 1.20842 1.19379 1.21853 0.87651 0.92251 0.96500 0.92849 0.92899 0.93231 0.92241 0.91976 0.91804 0.91717 0.89808 0.90445 0.92126 0.91005 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.50 5.83 -26.73 -0.16 -1.65 16 3 C -0.10 -1.49 4.57 -26.73 -0.12 -1.61 16 4 C -0.12 -2.07 3.12 -88.99 -0.28 -2.34 16 5 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 6 C -0.14 -2.72 5.89 -26.75 -0.16 -2.87 16 7 C 0.44 11.51 7.97 -10.86 -0.09 11.42 16 8 O -0.60 -17.69 17.62 5.54 0.10 -17.59 16 9 N -0.44 -11.88 3.05 -113.62 -0.35 -12.23 16 10 C -0.30 -8.64 9.84 -14.93 -0.15 -8.79 16 11 H 0.10 2.96 7.74 -52.49 -0.41 2.55 16 12 C 0.03 0.78 5.39 -17.47 -0.09 0.68 16 13 N -0.89 -23.70 10.63 55.50 0.59 -23.11 16 14 Si 0.93 20.92 29.56 -169.99 -5.03 15.89 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.14 3.21 4.92 -3.12 -0.02 3.19 16 19 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.75 7.74 -51.92 -0.40 0.35 16 24 H 0.06 0.93 7.93 -51.93 -0.41 0.52 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.08 1.51 7.75 -51.93 -0.40 1.11 16 27 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.07 1.71 7.53 -51.93 -0.39 1.32 16 30 H 0.07 1.74 7.31 -51.93 -0.38 1.36 16 LS Contribution 250.94 15.07 3.78 3.78 Total: -1.00 -31.14 250.94 -6.08 -37.22 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -4.49 Total: -0.79 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -0.69 Total: -3.17 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.24 Total: -35.34 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.10 Total: -17.59 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.14 -6.08 -37.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133774119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.514 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds