Wall clock time and date at job start Mon Mar 30 2020 01:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47368 * 2 1 4 4 C 1.53002 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.85377 * 51.21363 * 4 3 2 6 6 C 1.54628 * 110.97177 * 287.38037 * 4 3 2 7 7 C 1.51275 * 104.19468 * 217.08328 * 6 4 3 8 8 O 1.21299 * 124.94043 * 196.29260 * 7 6 4 9 9 N 1.34419 * 110.11831 * 16.25140 * 7 6 4 10 10 C 1.37101 * 124.34867 * 180.42810 * 9 7 6 11 11 H 1.07998 * 120.00248 * 14.06128 * 10 9 7 12 12 C 1.38948 * 119.99600 * 194.06105 * 10 9 7 13 13 N 1.31412 * 120.00483 * 8.57465 * 12 10 9 14 14 Si 1.86804 * 119.99759 * 188.57251 * 12 10 9 15 15 H 1.48491 * 109.47384 * 90.00067 * 14 12 10 16 16 H 1.48508 * 109.47030 * 210.00262 * 14 12 10 17 17 H 1.48504 * 109.46901 * 329.99838 * 14 12 10 18 18 C 1.46763 * 111.29907 * 0.41087 * 9 7 6 19 19 H 1.09007 * 109.47153 * 300.00221 * 1 2 3 20 20 H 1.09000 * 109.46977 * 59.99401 * 1 2 3 21 21 H 1.08996 * 109.47634 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.46881 * 240.00109 * 2 1 3 23 23 H 1.09007 * 109.47039 * 119.99923 * 2 1 3 24 24 H 1.09007 * 109.47164 * 59.99785 * 3 2 1 25 25 H 1.09000 * 109.47561 * 300.00241 * 3 2 1 26 26 H 1.09000 * 110.48724 * 335.76139 * 6 4 3 27 27 H 1.08996 * 110.48335 * 98.40420 * 6 4 3 28 28 H 0.96995 * 120.00208 * 180.02562 * 13 12 10 29 29 H 1.09002 * 110.24460 * 223.98204 * 18 9 7 30 30 H 1.08992 * 110.24671 * 101.98305 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9584 0.8042 -0.7931 6 6 4.1229 1.0113 1.3789 7 6 5.3481 1.8769 1.5744 8 8 6.2243 1.6674 2.3866 9 7 5.3249 2.9114 0.7164 10 6 6.2992 3.8728 0.6374 11 1 7.2535 3.7153 1.1181 12 6 6.0589 5.0496 -0.0610 13 7 4.8500 5.3173 -0.5014 14 14 7.4543 6.2515 -0.3741 15 1 8.1174 5.9161 -1.6598 16 1 6.9123 7.6325 -0.4422 17 1 8.4424 6.1614 0.7308 18 6 4.1229 2.8794 -0.1250 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8901 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9564 -0.8899 26 1 3.3897 1.2055 2.1617 27 1 4.3988 -0.0431 1.3663 28 1 4.6823 6.1387 -0.9893 29 1 4.3824 3.0944 -1.1617 30 1 3.3891 3.5990 0.2379 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133774119.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:37 Heat of formation + Delta-G solvation = -73.233371 kcal Electronic energy + Delta-G solvation = -12705.440193 eV Core-core repulsion = 10499.082066 eV Total energy + Delta-G solvation = -2206.358127 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.05446 -37.52386 -36.25611 -34.27429 -32.11938 -28.77434 -27.61093 -25.90100 -22.46077 -21.36818 -20.99190 -19.01834 -17.50019 -16.87341 -16.11058 -15.83505 -15.57690 -14.61672 -14.44429 -14.17482 -14.02430 -13.61688 -13.40351 -12.88639 -12.83630 -12.55061 -12.24313 -12.11974 -12.01857 -11.62715 -11.43265 -11.28130 -11.01267 -10.34485 -9.83740 -8.41247 -6.01491 1.34532 1.38449 1.51411 1.95393 2.24260 3.05053 3.20997 3.70225 3.79016 3.91541 4.33271 4.37568 4.48455 4.57053 4.81321 4.88487 4.95511 5.05178 5.08309 5.20824 5.22530 5.33196 5.35163 5.48159 5.54670 5.62041 5.90891 6.44202 7.07949 7.30614 8.02742 8.63772 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048140 B = 0.009868 C = 0.008398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.497087 B = 2836.729633 C = 3333.505467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.097 4.097 4 C -0.097 4.097 5 H 0.091 0.909 6 C -0.123 4.123 7 C 0.418 3.582 8 O -0.646 6.646 9 N -0.459 5.459 10 C -0.351 4.351 11 H 0.074 0.926 12 C -0.001 4.001 13 N -0.895 5.895 14 Si 0.996 3.004 15 H -0.265 1.265 16 H -0.268 1.268 17 H -0.275 1.275 18 C 0.145 3.855 19 H 0.052 0.948 20 H 0.055 0.945 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.277 0.723 29 H 0.055 0.945 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 -5.812 -3.806 11.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.135 4.135 4 C -0.116 4.116 5 H 0.109 0.891 6 C -0.163 4.163 7 C 0.207 3.793 8 O -0.536 6.536 9 N -0.177 5.177 10 C -0.478 4.478 11 H 0.092 0.908 12 C -0.203 4.203 13 N -0.533 5.533 14 Si 0.819 3.181 15 H -0.190 1.190 16 H -0.193 1.193 17 H -0.200 1.200 18 C 0.021 3.979 19 H 0.071 0.929 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.742 -5.661 -3.573 11.011 hybrid contribution 0.886 0.877 -0.025 1.247 sum -7.857 -4.784 -3.598 9.877 Atomic orbital electron populations 1.21760 0.95041 1.02044 1.01904 1.21521 0.96390 0.95426 1.02526 1.21514 0.91175 0.98237 1.02533 1.22380 0.97605 0.95301 0.96343 0.89102 1.22194 0.94981 1.00006 0.99154 1.21529 0.89711 0.85597 0.82415 1.90456 1.44341 1.77304 1.41517 1.44299 1.20051 1.22084 1.31216 1.19651 0.95040 0.97625 1.35477 0.90845 1.26128 1.00020 0.98427 0.95768 1.69990 1.20425 1.26376 1.36495 0.84899 0.77364 0.77020 0.78849 1.19030 1.19264 1.19970 1.21862 0.85958 0.95398 0.94635 0.92868 0.92568 0.91869 0.91420 0.91713 0.92043 0.91087 0.87981 0.87974 0.91339 0.92666 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.91 71.98 0.71 -1.90 16 2 C -0.12 -2.48 5.83 30.59 0.18 -2.30 16 3 C -0.10 -2.51 4.57 30.59 0.14 -2.37 16 4 C -0.10 -3.27 3.12 -9.74 -0.03 -3.30 16 5 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 6 C -0.12 -4.61 5.89 30.59 0.18 -4.43 16 7 C 0.42 22.14 7.97 87.90 0.70 22.84 16 8 O -0.65 -39.68 17.62 -3.09 -0.05 -39.73 16 9 N -0.46 -25.21 3.05 -631.98 -1.93 -27.14 16 10 C -0.35 -20.77 9.84 84.04 0.83 -19.94 16 11 H 0.07 4.60 7.74 -2.91 -0.02 4.58 16 12 C 0.00 -0.07 5.39 84.93 0.46 0.38 16 13 N -0.89 -47.71 10.63 21.66 0.23 -47.48 16 14 Si 1.00 42.82 29.56 68.60 2.03 44.85 16 15 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 C 0.14 6.56 4.92 86.83 0.43 6.99 16 19 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 20 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.06 1.31 7.74 -2.38 -0.02 1.29 16 24 H 0.06 1.64 7.93 -2.38 -0.02 1.62 16 25 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.10 3.46 7.75 -2.39 -0.02 3.44 16 27 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 29 H 0.05 2.64 7.53 -2.39 -0.02 2.63 16 30 H 0.06 2.81 7.31 -2.39 -0.02 2.79 16 Total: -1.00 -68.92 250.94 4.97 -63.95 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.10 Total: 9.58 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 3.59 Total: -4.03 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -1.70 Total: -74.62 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.05 Total: -39.73 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -68.92 4.97 -63.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133774119.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.280 kcal (2) G-P(sol) polarization free energy of solvation -68.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds