Wall clock time and date at job start Mon Mar 30 2020 01:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47032 * 2 1 4 4 C 1.52995 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.09007 * 110.85805 * 308.79118 * 4 3 2 6 6 C 1.54636 * 111.00134 * 72.59994 * 4 3 2 7 7 C 1.51282 * 104.25359 * 142.71333 * 6 4 3 8 8 O 1.21300 * 124.94556 * 164.00880 * 7 6 4 9 9 N 1.34417 * 110.11840 * 344.14946 * 7 6 4 10 10 C 1.37100 * 124.35247 * 179.43727 * 9 7 6 11 11 H 1.08004 * 120.00159 * 146.03729 * 10 9 7 12 12 C 1.38945 * 120.00265 * 326.03552 * 10 9 7 13 13 N 1.31412 * 119.99483 * 339.78512 * 12 10 9 14 14 Si 1.86802 * 120.00207 * 159.77980 * 12 10 9 15 15 H 1.48496 * 109.46982 * 265.11675 * 14 12 10 16 16 H 1.48498 * 109.47051 * 145.11954 * 14 12 10 17 17 H 1.48491 * 109.47022 * 25.11795 * 14 12 10 18 18 C 1.46766 * 111.29997 * 359.16779 * 9 7 6 19 19 H 1.08997 * 109.47230 * 299.99903 * 1 2 3 20 20 H 1.08995 * 109.47327 * 60.00399 * 1 2 3 21 21 H 1.09006 * 109.46972 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47230 * 240.00097 * 2 1 3 23 23 H 1.08999 * 109.47247 * 120.00353 * 2 1 3 24 24 H 1.08997 * 109.47034 * 59.99977 * 3 2 1 25 25 H 1.09004 * 109.46921 * 300.00212 * 3 2 1 26 26 H 1.08999 * 110.48927 * 261.61027 * 6 4 3 27 27 H 1.08998 * 110.48223 * 24.12392 * 6 4 3 28 28 H 0.97007 * 120.00015 * 179.97438 * 13 12 10 29 29 H 1.08997 * 110.24970 * 136.28171 * 18 9 7 30 30 H 1.08994 * 110.24970 * 258.28470 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9584 0.8043 0.7930 6 6 4.1236 1.0111 -1.3785 7 6 5.3460 1.8799 -1.5774 8 8 6.2193 1.6741 -2.3937 9 7 5.3253 2.9114 -0.7158 10 6 6.2993 3.8730 -0.6367 11 1 6.0353 4.8897 -0.3857 12 6 7.6261 3.5396 -0.8793 13 7 8.0156 2.2876 -0.7913 14 14 8.8563 4.8709 -1.3307 15 1 8.9745 4.9551 -2.8086 16 1 10.1807 4.5398 -0.7464 17 1 8.3916 6.1760 -0.7961 18 6 4.1228 2.8796 0.1251 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5139 0.8899 24 1 1.6766 1.9563 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 4.3994 -0.0433 -1.3657 27 1 3.3899 1.2031 -2.1614 28 1 8.9418 2.0546 -0.9611 29 1 4.3816 3.0948 1.1618 30 1 3.3892 3.5991 -0.2384 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133774342.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:39 Heat of formation + Delta-G solvation = -68.013954 kcal Electronic energy + Delta-G solvation = -12745.429744 eV Core-core repulsion = 10539.297947 eV Total energy + Delta-G solvation = -2206.131797 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.85758 -37.35431 -35.83230 -34.35525 -31.95900 -28.79023 -27.45961 -25.67716 -22.46129 -21.37543 -21.21431 -18.51803 -17.15871 -17.06523 -16.10323 -15.70090 -15.42965 -14.60582 -14.32092 -14.14987 -13.87740 -13.55690 -13.28511 -12.86277 -12.84408 -12.61851 -12.19295 -12.14850 -11.97371 -11.57747 -11.44476 -11.25971 -10.87842 -10.05017 -9.27571 -8.26104 -5.98683 1.36077 1.43546 1.51549 2.25321 2.43189 3.17468 3.38136 3.70785 3.86113 3.90041 4.33255 4.37547 4.46359 4.63949 4.79875 4.82563 4.90273 4.95294 5.06386 5.10102 5.18721 5.29049 5.39389 5.45523 5.53560 5.60981 6.05555 6.88678 7.20052 7.54791 8.36408 8.82602 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.081934 B = 0.008745 C = 0.008278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.654783 B = 3201.239712 C = 3381.612142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.096 4.096 4 C -0.084 4.084 5 H 0.079 0.921 6 C -0.132 4.132 7 C 0.441 3.559 8 O -0.600 6.600 9 N -0.476 5.476 10 C -0.366 4.366 11 H 0.093 0.907 12 C -0.005 4.005 13 N -0.867 5.867 14 Si 0.984 3.016 15 H -0.289 1.289 16 H -0.279 1.279 17 H -0.247 1.247 18 C 0.095 3.905 19 H 0.059 0.941 20 H 0.055 0.945 21 H 0.058 0.942 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.260 0.740 29 H 0.064 0.936 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.503 -1.515 3.999 14.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.134 4.134 4 C -0.103 4.103 5 H 0.098 0.902 6 C -0.172 4.172 7 C 0.230 3.770 8 O -0.483 6.483 9 N -0.198 5.198 10 C -0.493 4.493 11 H 0.111 0.889 12 C -0.210 4.210 13 N -0.502 5.502 14 Si 0.808 3.192 15 H -0.216 1.216 16 H -0.205 1.205 17 H -0.170 1.170 18 C -0.028 4.028 19 H 0.079 0.921 20 H 0.074 0.926 21 H 0.077 0.923 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.886 -1.661 3.633 13.491 hybrid contribution 1.129 0.355 -0.293 1.219 sum -11.757 -1.306 3.340 12.292 Atomic orbital electron populations 1.21747 0.94748 1.01951 1.02139 1.21534 0.96586 0.96085 1.02100 1.21551 0.90703 0.97951 1.03175 1.22140 0.97491 0.94922 0.95789 0.90215 1.22235 0.95916 0.99530 0.99539 1.21288 0.88226 0.85225 0.82272 1.90457 1.42640 1.75294 1.39920 1.44015 1.19702 1.24987 1.31064 1.19500 0.86641 0.90503 1.52634 0.88950 1.26273 0.99920 0.98485 0.96352 1.70072 1.17079 1.20084 1.42960 0.85087 0.77348 0.79004 0.77796 1.21568 1.20458 1.17037 1.22295 0.87434 0.97697 0.95324 0.92143 0.92611 0.92333 0.92439 0.91888 0.90020 0.91276 0.90012 0.87886 0.93082 0.91714 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.91 71.98 0.71 -1.64 16 2 C -0.13 -2.47 5.83 30.59 0.18 -2.30 16 3 C -0.10 -2.15 4.57 30.59 0.14 -2.01 16 4 C -0.08 -2.70 3.12 -9.73 -0.03 -2.73 16 5 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 6 C -0.13 -5.14 5.89 30.59 0.18 -4.96 16 7 C 0.44 24.43 7.32 87.90 0.64 25.07 16 8 O -0.60 -39.68 15.27 -3.09 -0.05 -39.72 16 9 N -0.48 -25.44 2.98 -631.97 -1.89 -27.33 16 10 C -0.37 -21.20 9.85 84.04 0.83 -20.37 16 11 H 0.09 4.99 7.91 -2.91 -0.02 4.96 16 12 C 0.00 -0.27 4.74 84.93 0.40 0.13 16 13 N -0.87 -55.82 11.28 21.66 0.24 -55.58 16 14 Si 0.98 46.58 29.60 68.60 2.03 48.61 16 15 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 18 C 0.10 3.70 6.82 86.83 0.59 4.29 16 19 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 20 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 21 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 22 H 0.06 1.21 7.74 -2.39 -0.02 1.19 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 1.51 7.93 -2.39 -0.02 1.49 16 26 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 27 H 0.10 3.51 7.75 -2.39 -0.02 3.49 16 28 H 0.26 16.04 8.31 -92.70 -0.77 15.27 16 29 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 30 H 0.07 2.46 7.89 -2.39 -0.02 2.44 16 Total: -1.00 -76.70 251.17 5.09 -71.61 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.10 Total: 6.93 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 3.65 Total: -4.52 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -1.64 Total: -82.91 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.05 Total: -39.72 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -76.70 5.09 -71.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133774342.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.601 kcal (2) G-P(sol) polarization free energy of solvation -76.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds