Wall clock time and date at job start Mon Mar 30 2020 02:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.59876 * 2 1 4 4 C 1.53344 * 109.60611 * 239.50738 * 2 1 3 5 5 C 1.53071 * 108.42425 * 172.70842 * 4 2 1 6 6 H 1.09004 * 109.39874 * 169.02865 * 5 4 2 7 7 C 1.52997 * 109.40295 * 288.85465 * 5 4 2 8 8 C 1.50152 * 109.94771 * 48.69452 * 5 4 2 9 9 O 1.21294 * 118.23577 * 162.62249 * 8 5 4 10 10 N 1.33359 * 123.52334 * 342.89868 * 8 5 4 11 11 C 1.37097 * 117.94713 * 181.94884 * 10 8 5 12 12 H 1.08005 * 119.99750 * 221.11741 * 11 10 8 13 13 C 1.38946 * 120.00168 * 41.11573 * 11 10 8 14 14 N 1.31407 * 119.99977 * 207.80551 * 13 11 10 15 15 Si 1.86794 * 120.00072 * 27.80692 * 13 11 10 16 16 H 1.48502 * 109.47099 * 95.22543 * 15 13 11 17 17 H 1.48502 * 109.47192 * 335.23025 * 15 13 11 18 18 H 1.48493 * 109.47520 * 215.22742 * 15 13 11 19 19 C 1.45755 * 124.10132 * 1.66673 * 10 8 5 20 20 H 1.09002 * 109.47193 * 299.67548 * 1 2 3 21 21 H 1.08994 * 109.47225 * 59.67924 * 1 2 3 22 22 H 1.09003 * 109.46853 * 179.67540 * 1 2 3 23 23 H 1.08994 * 109.67702 * 292.44572 * 4 2 1 24 24 H 1.09007 * 109.67101 * 52.94186 * 4 2 1 25 25 H 1.09008 * 109.46553 * 60.00471 * 7 5 4 26 26 H 1.09000 * 109.46831 * 180.02562 * 7 5 4 27 27 H 1.08998 * 109.47332 * 300.00267 * 7 5 4 28 28 H 0.97006 * 120.00268 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.29877 * 101.52232 * 19 10 8 30 30 H 1.08997 * 109.30135 * 221.09707 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0446 -0.7330 -1.2448 5 6 3.5639 -0.5602 -1.3145 6 1 3.9699 -1.2288 -2.0736 7 6 3.8944 0.8875 -1.6832 8 6 4.1776 -0.8812 0.0177 9 8 5.3685 -1.1076 0.0613 10 7 3.4829 -0.9360 1.1547 11 6 4.1666 -1.1998 2.3134 12 1 3.7438 -1.8673 3.0498 13 6 5.4033 -0.6087 2.5403 14 7 6.2902 -1.2113 3.3000 15 14 5.8054 1.0427 1.7655 16 1 5.5106 2.1289 2.7342 17 1 4.9807 1.2308 0.5450 18 1 7.2445 1.0814 1.4012 19 6 2.0431 -0.7272 1.2435 20 1 -0.3634 0.5088 0.8929 21 1 -0.3633 0.5188 -0.8870 22 1 -0.3633 -1.0277 -0.0058 23 1 1.7986 -1.7925 -1.1746 24 1 1.5850 -0.3079 -2.1371 25 1 3.4862 1.5574 -0.9262 26 1 4.9761 1.0117 -1.7335 27 1 3.4562 1.1246 -2.6526 28 1 7.1535 -0.7985 3.4587 29 1 1.5436 -1.6923 1.3282 30 1 1.8197 -0.1274 2.1258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167909519.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:46 Heat of formation + Delta-G solvation = -33.312480 kcal Electronic energy + Delta-G solvation = -13476.192591 eV Core-core repulsion = 11271.565563 eV Total energy + Delta-G solvation = -2204.627028 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73340 -36.01638 -34.20478 -31.87231 -31.46705 -26.54453 -25.99316 -24.53806 -21.97970 -21.04185 -18.06298 -16.74374 -15.67621 -15.25377 -14.61547 -14.34212 -13.57916 -13.55872 -12.75373 -12.53115 -12.44303 -12.00225 -11.95870 -11.59980 -11.39721 -11.07028 -10.73795 -10.51515 -10.31366 -10.15804 -9.90037 -9.53250 -8.63828 -8.07673 -7.44368 -6.16947 -3.83077 3.32018 3.53658 3.55033 4.07467 4.57137 4.66627 5.02761 5.10554 5.11803 5.30207 5.45891 5.64669 5.80937 5.86208 5.92626 5.98795 6.06247 6.11178 6.24529 6.28453 6.40783 6.43378 6.54589 6.58168 6.77911 7.92521 8.14153 8.96431 9.11353 9.57528 10.02352 10.89731 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041174 B = 0.016717 C = 0.014569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.884185 B = 1674.580498 C = 1921.395352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 H 0.076 0.924 4 C -0.109 4.109 5 C -0.104 4.104 6 H 0.089 0.911 7 C -0.134 4.134 8 C 0.469 3.531 9 O -0.568 6.568 10 N -0.456 5.456 11 C -0.376 4.376 12 H 0.089 0.911 13 C 0.109 3.891 14 N -0.852 5.852 15 Si 0.908 3.092 16 H -0.304 1.304 17 H -0.260 1.260 18 H -0.290 1.290 19 C 0.117 3.883 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.270 0.730 29 H 0.050 0.950 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 4.328 -7.966 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 H 0.094 0.906 4 C -0.146 4.146 5 C -0.126 4.126 6 H 0.108 0.892 7 C -0.192 4.192 8 C 0.258 3.742 9 O -0.451 6.451 10 N -0.176 5.176 11 C -0.501 4.501 12 H 0.107 0.893 13 C -0.102 4.102 14 N -0.485 5.485 15 Si 0.738 3.262 16 H -0.233 1.233 17 H -0.185 1.185 18 H -0.216 1.216 19 C -0.007 4.007 20 H 0.075 0.925 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.858 4.169 -7.842 13.268 hybrid contribution 0.271 0.776 -0.264 0.863 sum -9.586 4.945 -8.106 13.493 Atomic orbital electron populations 1.21726 0.94718 1.01790 1.01490 1.21563 0.95673 1.00384 0.95728 0.90616 1.21728 0.94664 1.00702 0.97541 1.21194 0.95659 0.98632 0.97126 0.89234 1.21757 1.02044 0.95047 1.00344 1.19509 0.88151 0.81697 0.84841 1.90448 1.15685 1.52897 1.86082 1.43080 1.05487 1.62663 1.06413 1.18658 1.03189 1.30590 0.97661 0.89317 1.25204 0.94398 0.97525 0.93039 1.69876 1.04996 1.36241 1.37393 0.86318 0.78259 0.82195 0.79413 1.23316 1.18499 1.21608 1.21453 0.83688 0.98814 0.96764 0.92545 0.92790 0.92595 0.91577 0.91741 0.92432 0.92257 0.92725 0.91994 0.93199 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.11 -1.75 2.75 -90.48 -0.25 -2.00 16 3 H 0.08 1.20 6.46 -51.93 -0.34 0.87 16 4 C -0.11 -1.64 4.76 -26.52 -0.13 -1.77 16 5 C -0.10 -1.97 3.04 -92.00 -0.28 -2.25 16 6 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 7 C -0.13 -2.31 7.90 37.16 0.29 -2.01 16 8 C 0.47 11.71 4.47 -11.88 -0.05 11.66 16 9 O -0.57 -16.79 13.09 5.55 0.07 -16.72 16 10 N -0.46 -11.37 2.53 -116.01 -0.29 -11.66 16 11 C -0.38 -11.03 9.40 -14.93 -0.14 -11.17 16 12 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 13 C 0.11 3.32 4.41 -17.47 -0.08 3.24 16 14 N -0.85 -26.92 13.96 55.50 0.77 -26.15 16 15 Si 0.91 24.52 25.89 -169.99 -4.40 20.12 16 16 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 17 H -0.26 -6.61 3.86 56.52 0.22 -6.39 16 18 H -0.29 -8.07 7.11 56.52 0.40 -7.67 16 19 C 0.12 2.23 5.63 -4.49 -0.03 2.21 16 20 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 24 H 0.06 0.80 8.10 -51.92 -0.42 0.38 16 25 H 0.06 1.01 6.03 -51.92 -0.31 0.69 16 26 H 0.06 1.11 8.05 -51.93 -0.42 0.70 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.27 8.02 8.31 -40.82 -0.34 7.68 16 29 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 30 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 LS Contribution 235.12 15.07 3.54 3.54 Total: -1.00 -34.09 235.12 -5.22 -39.32 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.61 Total: -5.09 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.31 Total: -3.36 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.48 Total: -37.81 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.07 Total: -16.72 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -4.40 Total: 20.12 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -34.09 -5.22 -39.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167909519.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.003 kcal (2) G-P(sol) polarization free energy of solvation -34.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds