Wall clock time and date at job start Mon Mar 30 2020 02:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.59876 * 2 1 4 4 C 1.53344 * 109.60611 * 239.50738 * 2 1 3 5 5 C 1.53071 * 108.42425 * 172.70842 * 4 2 1 6 6 H 1.09004 * 109.39874 * 169.02865 * 5 4 2 7 7 C 1.52997 * 109.40295 * 288.85465 * 5 4 2 8 8 C 1.50152 * 109.94771 * 48.69452 * 5 4 2 9 9 O 1.21294 * 118.23577 * 162.62249 * 8 5 4 10 10 N 1.33359 * 123.52334 * 342.89868 * 8 5 4 11 11 C 1.37097 * 117.94713 * 181.94884 * 10 8 5 12 12 H 1.08005 * 119.99750 * 221.11741 * 11 10 8 13 13 C 1.38946 * 120.00168 * 41.11573 * 11 10 8 14 14 N 1.31407 * 119.99977 * 207.80551 * 13 11 10 15 15 Si 1.86794 * 120.00072 * 27.80692 * 13 11 10 16 16 H 1.48502 * 109.47099 * 95.22543 * 15 13 11 17 17 H 1.48502 * 109.47192 * 335.23025 * 15 13 11 18 18 H 1.48493 * 109.47520 * 215.22742 * 15 13 11 19 19 C 1.45755 * 124.10132 * 1.66673 * 10 8 5 20 20 H 1.09002 * 109.47193 * 299.67548 * 1 2 3 21 21 H 1.08994 * 109.47225 * 59.67924 * 1 2 3 22 22 H 1.09003 * 109.46853 * 179.67540 * 1 2 3 23 23 H 1.08994 * 109.67702 * 292.44572 * 4 2 1 24 24 H 1.09007 * 109.67101 * 52.94186 * 4 2 1 25 25 H 1.09008 * 109.46553 * 60.00471 * 7 5 4 26 26 H 1.09000 * 109.46831 * 180.02562 * 7 5 4 27 27 H 1.08998 * 109.47332 * 300.00267 * 7 5 4 28 28 H 0.97006 * 120.00268 * 180.02562 * 14 13 11 29 29 H 1.09002 * 109.29877 * 101.52232 * 19 10 8 30 30 H 1.08997 * 109.30135 * 221.09707 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0446 -0.7330 -1.2448 5 6 3.5639 -0.5602 -1.3145 6 1 3.9699 -1.2288 -2.0736 7 6 3.8944 0.8875 -1.6832 8 6 4.1776 -0.8812 0.0177 9 8 5.3685 -1.1076 0.0613 10 7 3.4829 -0.9360 1.1547 11 6 4.1666 -1.1998 2.3134 12 1 3.7438 -1.8673 3.0498 13 6 5.4033 -0.6087 2.5403 14 7 6.2902 -1.2113 3.3000 15 14 5.8054 1.0427 1.7655 16 1 5.5106 2.1289 2.7342 17 1 4.9807 1.2308 0.5450 18 1 7.2445 1.0814 1.4012 19 6 2.0431 -0.7272 1.2435 20 1 -0.3634 0.5088 0.8929 21 1 -0.3633 0.5188 -0.8870 22 1 -0.3633 -1.0277 -0.0058 23 1 1.7986 -1.7925 -1.1746 24 1 1.5850 -0.3079 -2.1371 25 1 3.4862 1.5574 -0.9262 26 1 4.9761 1.0117 -1.7335 27 1 3.4562 1.1246 -2.6526 28 1 7.1535 -0.7985 3.4587 29 1 1.5436 -1.6923 1.3282 30 1 1.8197 -0.1274 2.1258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167909519.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:45 Heat of formation + Delta-G solvation = -57.428612 kcal Electronic energy + Delta-G solvation = -13477.238344 eV Core-core repulsion = 11271.565563 eV Total energy + Delta-G solvation = -2205.672782 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.49878 -37.66197 -36.07786 -33.90495 -33.03293 -27.90064 -27.58006 -26.30884 -23.56876 -22.64142 -19.82751 -18.57914 -17.49225 -17.16627 -16.18804 -16.06632 -15.39332 -14.94207 -14.61309 -14.28407 -14.06679 -13.43153 -13.21141 -13.02148 -12.95218 -12.67745 -12.54324 -12.27675 -11.83558 -11.54026 -11.45632 -11.23058 -10.82536 -10.06615 -9.54213 -8.48750 -6.14750 1.20297 1.31069 1.37983 2.06176 2.48931 2.73285 3.11422 3.78997 3.86327 3.90723 4.02759 4.40352 4.53568 4.63752 4.69070 4.79366 4.91769 4.95974 4.98848 5.07065 5.13289 5.22348 5.29652 5.45137 5.56315 5.69569 5.86978 6.83469 6.95895 7.44624 8.01225 8.61458 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041174 B = 0.016717 C = 0.014569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.884185 B = 1674.580498 C = 1921.395352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.108 4.108 3 H 0.074 0.926 4 C -0.102 4.102 5 C -0.101 4.101 6 H 0.097 0.903 7 C -0.132 4.132 8 C 0.458 3.542 9 O -0.624 6.624 10 N -0.467 5.467 11 C -0.381 4.381 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.899 5.899 15 Si 0.957 3.043 16 H -0.288 1.288 17 H -0.238 1.238 18 H -0.307 1.307 19 C 0.108 3.892 20 H 0.061 0.939 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.068 0.932 24 H 0.109 0.891 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.102 0.898 28 H 0.271 0.729 29 H 0.059 0.941 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 5.847 -10.444 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.139 4.139 5 C -0.123 4.123 6 H 0.115 0.885 7 C -0.190 4.190 8 C 0.249 3.751 9 O -0.511 6.511 10 N -0.187 5.187 11 C -0.507 4.507 12 H 0.078 0.922 13 C -0.148 4.148 14 N -0.535 5.535 15 Si 0.785 3.215 16 H -0.216 1.216 17 H -0.161 1.161 18 H -0.234 1.234 19 C -0.014 4.014 20 H 0.080 0.920 21 H 0.098 0.902 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.127 0.873 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.599 5.699 -10.323 17.256 hybrid contribution 1.065 0.179 0.518 1.197 sum -11.535 5.878 -9.805 16.240 Atomic orbital electron populations 1.21679 0.91305 1.02828 1.03102 1.21555 0.98286 0.99422 0.93378 0.90768 1.21770 0.91571 1.01345 0.99246 1.21248 0.98254 0.99984 0.92795 0.88463 1.21780 1.00870 0.93462 1.02856 1.20781 0.87658 0.79765 0.86867 1.90418 1.18449 1.54980 1.87222 1.43320 1.07722 1.62511 1.05150 1.18652 1.03544 1.29855 0.98630 0.92235 1.25967 0.94540 1.00519 0.93732 1.69964 1.05687 1.37916 1.39958 0.85558 0.77244 0.79000 0.79729 1.21629 1.16139 1.23435 1.21727 0.80138 1.00078 0.99500 0.92038 0.90162 0.91893 0.91372 0.87271 0.92703 0.94668 0.87909 0.91941 0.92316 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.11 -2.83 2.75 -10.71 -0.03 -2.86 16 3 H 0.07 2.02 6.46 -2.39 -0.02 2.00 16 4 C -0.10 -2.56 4.76 30.73 0.15 -2.42 16 5 C -0.10 -3.49 3.04 -11.69 -0.04 -3.53 16 6 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 7 C -0.13 -4.01 7.90 71.98 0.57 -3.44 16 8 C 0.46 22.51 4.47 87.71 0.39 22.90 16 9 O -0.62 -37.36 13.09 -3.07 -0.04 -37.40 16 10 N -0.47 -23.15 2.53 -640.13 -1.62 -24.77 16 11 C -0.38 -22.98 9.40 84.04 0.79 -22.19 16 12 H 0.06 3.83 8.06 -2.91 -0.02 3.80 16 13 C 0.06 3.66 4.41 84.93 0.37 4.03 16 14 N -0.90 -59.28 13.96 21.66 0.30 -58.98 16 15 Si 0.96 51.30 25.89 68.60 1.78 53.08 16 16 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 17 H -0.24 -11.70 3.86 99.48 0.38 -11.31 16 18 H -0.31 -17.19 7.11 99.48 0.71 -16.48 16 19 C 0.11 3.94 5.63 86.49 0.49 4.43 16 20 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 21 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.07 1.72 8.13 -2.39 -0.02 1.70 16 24 H 0.11 1.89 8.10 -2.38 -0.02 1.87 16 25 H 0.05 1.69 6.03 -2.38 -0.01 1.67 16 26 H 0.03 1.22 8.05 -2.39 -0.02 1.20 16 27 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.27 16.84 8.31 -92.70 -0.77 16.07 16 29 H 0.06 2.02 8.11 -2.39 -0.02 2.00 16 30 H 0.07 2.41 8.08 -2.39 -0.02 2.39 16 Total: -1.00 -77.76 235.12 4.56 -73.20 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: 0.78 Total: -0.38 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 3.36 Total: -4.75 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -1.31 Total: -83.75 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.04 Total: -37.40 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 1.78 Total: 53.08 kcal Total: -77.76 4.56 -73.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167909519.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.771 kcal (2) G-P(sol) polarization free energy of solvation -77.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds