Wall clock time and date at job start Mon Mar 30 2020 02:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.40120 * 2 1 4 4 C 1.53069 * 109.40309 * 240.17267 * 2 1 3 5 5 C 1.53346 * 108.42549 * 190.96910 * 4 2 1 6 6 H 1.08993 * 109.60434 * 307.77476 * 5 4 2 7 7 C 1.52999 * 109.60353 * 187.45166 * 5 4 2 8 8 C 1.52916 * 108.67299 * 67.53196 * 5 4 2 9 9 N 1.45757 * 110.48895 * 309.24662 * 8 5 4 10 10 C 1.37097 * 117.94947 * 199.07722 * 9 8 5 11 11 H 1.07998 * 120.00292 * 157.47890 * 10 9 8 12 12 C 1.38953 * 120.00007 * 337.47983 * 10 9 8 13 13 N 1.31421 * 119.99731 * 342.61903 * 12 10 9 14 14 Si 1.86799 * 120.00351 * 162.61521 * 12 10 9 15 15 H 1.48503 * 109.46820 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46987 * 120.00036 * 14 12 10 17 17 H 1.48496 * 109.47173 * 239.99868 * 14 12 10 18 18 C 1.33350 * 124.10665 * 19.07242 * 9 8 5 19 19 O 1.21294 * 118.24786 * 177.77814 * 18 9 8 20 20 H 1.08997 * 109.47220 * 179.82596 * 1 2 3 21 21 H 1.08997 * 109.47366 * 299.82785 * 1 2 3 22 22 H 1.09007 * 109.46922 * 59.82813 * 1 2 3 23 23 H 1.08992 * 109.67464 * 310.70637 * 4 2 1 24 24 H 1.09002 * 109.67292 * 71.23519 * 4 2 1 25 25 H 1.08996 * 109.47400 * 59.99875 * 7 5 4 26 26 H 1.08996 * 109.47341 * 180.02562 * 7 5 4 27 27 H 1.09004 * 109.47031 * 300.00268 * 7 5 4 28 28 H 1.09001 * 109.30432 * 69.55526 * 8 5 4 29 29 H 1.09004 * 109.30471 * 189.14130 * 8 5 4 30 30 H 0.96994 * 119.99802 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0282 0.0000 4 6 2.0385 -0.7181 -1.2525 5 6 3.5466 -0.9496 -1.0998 6 1 4.0378 -0.0088 -0.8518 7 6 4.1172 -1.4969 -2.4097 8 6 3.7754 -1.9599 0.0251 9 7 3.0492 -1.5612 1.2244 10 6 3.4396 -2.1028 2.4218 11 1 3.2043 -1.5961 3.3460 12 6 4.1382 -3.3037 2.4464 13 7 4.1331 -4.0885 1.3922 14 14 5.0848 -3.8025 3.9775 15 1 4.9319 -2.7536 5.0176 16 1 4.5520 -5.0899 4.4914 17 1 6.5225 -3.9609 3.6411 18 6 2.0288 -0.7027 1.2299 19 8 1.4739 -0.4774 2.2847 20 1 -0.3633 -1.0276 -0.0031 21 1 -0.3634 0.5111 0.8915 22 1 -0.3633 0.5165 -0.8885 23 1 1.5291 -1.6758 -1.3587 24 1 1.8490 -0.1017 -2.1313 25 1 3.9403 -0.7794 -3.2109 26 1 5.1890 -1.6611 -2.2986 27 1 3.6287 -2.4405 -2.6526 28 1 3.4284 -2.9419 -0.2964 29 1 4.8402 -2.0108 0.2527 30 1 4.6204 -4.9269 1.4095 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167909630.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:48 Heat of formation + Delta-G solvation = -46.340661 kcal Electronic energy + Delta-G solvation = -13201.071023 eV Core-core repulsion = 10995.879051 eV Total energy + Delta-G solvation = -2205.191972 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.35913 -35.66256 -34.54782 -31.82333 -31.05854 -26.34996 -25.76287 -24.65822 -22.00287 -20.20650 -18.25037 -16.86952 -15.59387 -14.83896 -14.45361 -14.14135 -13.85752 -13.21013 -12.56985 -12.36344 -12.16354 -11.82661 -11.68866 -11.31370 -11.24703 -11.00592 -10.52863 -10.32819 -10.32116 -10.13105 -9.93391 -9.81499 -8.92531 -8.12892 -7.56320 -6.22423 -3.82295 3.18541 3.28736 3.36554 4.03081 4.20407 4.92821 5.14757 5.23419 5.38019 5.42880 5.61932 5.87048 6.01531 6.04405 6.15596 6.19904 6.29929 6.32130 6.41683 6.59996 6.67337 6.69419 6.81414 7.02612 7.42769 7.66316 8.29584 8.56246 9.28451 9.59459 10.10444 10.77102 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.014185 C = 0.010984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.489949 B = 1973.390755 C = 2548.461962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.081 0.919 4 C -0.108 4.108 5 C -0.119 4.119 6 H 0.065 0.935 7 C -0.135 4.135 8 C 0.141 3.859 9 N -0.438 5.438 10 C -0.310 4.310 11 H 0.100 0.900 12 C 0.030 3.970 13 N -0.882 5.882 14 Si 0.922 3.078 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 C 0.451 3.549 19 O -0.600 6.600 20 H 0.052 0.948 21 H 0.063 0.937 22 H 0.050 0.950 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.151 3.652 -7.563 8.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.120 4.120 3 H 0.099 0.901 4 C -0.146 4.146 5 C -0.138 4.138 6 H 0.083 0.917 7 C -0.193 4.193 8 C 0.017 3.983 9 N -0.155 5.155 10 C -0.438 4.438 11 H 0.118 0.882 12 C -0.173 4.173 13 N -0.521 5.521 14 Si 0.749 3.251 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.207 1.207 18 C 0.239 3.761 19 O -0.486 6.486 20 H 0.071 0.929 21 H 0.082 0.918 22 H 0.069 0.931 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.079 0.921 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.015 3.566 -7.115 7.959 hybrid contribution 0.623 -0.417 0.562 0.937 sum 0.608 3.148 -6.553 7.296 Atomic orbital electron populations 1.21557 0.93770 1.01911 1.01207 1.21047 0.97008 0.99793 0.94193 0.90127 1.21738 0.95631 1.00581 0.96604 1.21653 0.95737 0.99932 0.96520 0.91702 1.21659 1.00807 1.00754 0.96088 1.21346 0.96883 0.96800 0.83224 1.43102 1.26834 1.37825 1.07768 1.19764 1.33289 1.04336 0.86424 0.88235 1.25310 0.98560 0.94953 0.98460 1.70009 1.41197 1.10934 1.29978 0.85923 0.79007 0.78527 0.81621 1.19259 1.20835 1.20710 1.19488 0.81823 0.84858 0.89950 1.90498 1.58116 1.67656 1.32351 0.92863 0.91837 0.93147 0.91534 0.92206 0.93202 0.92752 0.92507 0.89493 0.92141 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.88 37.16 0.33 -1.89 16 2 C -0.10 -1.93 2.95 -91.99 -0.27 -2.20 16 3 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 4 C -0.11 -1.83 4.63 -26.52 -0.12 -1.96 16 5 C -0.12 -2.13 2.79 -90.48 -0.25 -2.38 16 6 H 0.06 1.14 8.12 -51.93 -0.42 0.72 16 7 C -0.14 -1.96 9.20 37.16 0.34 -1.62 16 8 C 0.14 3.24 4.05 -4.49 -0.02 3.22 16 9 N -0.44 -11.65 2.97 -116.00 -0.34 -12.00 16 10 C -0.31 -8.97 9.03 -14.93 -0.13 -9.11 16 11 H 0.10 3.04 7.23 -52.49 -0.38 2.66 16 12 C 0.03 0.81 4.98 -17.46 -0.09 0.72 16 13 N -0.88 -23.95 10.64 55.50 0.59 -23.36 16 14 Si 0.92 21.25 29.59 -169.99 -5.03 16.22 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.45 11.58 7.00 -11.87 -0.08 11.50 16 19 O -0.60 -17.61 15.53 5.55 0.09 -17.52 16 20 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.06 1.17 7.79 -51.93 -0.40 0.77 16 22 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 23 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.09 2.15 6.76 -51.93 -0.35 1.80 16 29 H 0.06 1.45 7.60 -51.93 -0.39 1.06 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 244.44 15.07 3.68 3.68 Total: -1.00 -31.26 244.44 -5.78 -37.03 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.47 Total: -0.35 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.30 Total: -3.71 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.25 Total: -35.36 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.09 Total: -17.52 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.26 -5.78 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167909630.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.310 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds