Wall clock time and date at job start Mon Mar 30 2020 02:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.40120 * 2 1 4 4 C 1.53069 * 109.40309 * 240.17267 * 2 1 3 5 5 C 1.53346 * 108.42549 * 190.96910 * 4 2 1 6 6 H 1.08993 * 109.60434 * 307.77476 * 5 4 2 7 7 C 1.52999 * 109.60353 * 187.45166 * 5 4 2 8 8 C 1.52916 * 108.67299 * 67.53196 * 5 4 2 9 9 N 1.45757 * 110.48895 * 309.24662 * 8 5 4 10 10 C 1.37097 * 117.94947 * 199.07722 * 9 8 5 11 11 H 1.07998 * 120.00292 * 157.47890 * 10 9 8 12 12 C 1.38953 * 120.00007 * 337.47983 * 10 9 8 13 13 N 1.31421 * 119.99731 * 342.61903 * 12 10 9 14 14 Si 1.86799 * 120.00351 * 162.61521 * 12 10 9 15 15 H 1.48503 * 109.46820 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46987 * 120.00036 * 14 12 10 17 17 H 1.48496 * 109.47173 * 239.99868 * 14 12 10 18 18 C 1.33350 * 124.10665 * 19.07242 * 9 8 5 19 19 O 1.21294 * 118.24786 * 177.77814 * 18 9 8 20 20 H 1.08997 * 109.47220 * 179.82596 * 1 2 3 21 21 H 1.08997 * 109.47366 * 299.82785 * 1 2 3 22 22 H 1.09007 * 109.46922 * 59.82813 * 1 2 3 23 23 H 1.08992 * 109.67464 * 310.70637 * 4 2 1 24 24 H 1.09002 * 109.67292 * 71.23519 * 4 2 1 25 25 H 1.08996 * 109.47400 * 59.99875 * 7 5 4 26 26 H 1.08996 * 109.47341 * 180.02562 * 7 5 4 27 27 H 1.09004 * 109.47031 * 300.00268 * 7 5 4 28 28 H 1.09001 * 109.30432 * 69.55526 * 8 5 4 29 29 H 1.09004 * 109.30471 * 189.14130 * 8 5 4 30 30 H 0.96994 * 119.99802 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8920 1.0282 0.0000 4 6 2.0385 -0.7181 -1.2525 5 6 3.5466 -0.9496 -1.0998 6 1 4.0378 -0.0088 -0.8518 7 6 4.1172 -1.4969 -2.4097 8 6 3.7754 -1.9599 0.0251 9 7 3.0492 -1.5612 1.2244 10 6 3.4396 -2.1028 2.4218 11 1 3.2043 -1.5961 3.3460 12 6 4.1382 -3.3037 2.4464 13 7 4.1331 -4.0885 1.3922 14 14 5.0848 -3.8025 3.9775 15 1 4.9319 -2.7536 5.0176 16 1 4.5520 -5.0899 4.4914 17 1 6.5225 -3.9609 3.6411 18 6 2.0288 -0.7027 1.2299 19 8 1.4739 -0.4774 2.2847 20 1 -0.3633 -1.0276 -0.0031 21 1 -0.3634 0.5111 0.8915 22 1 -0.3633 0.5165 -0.8885 23 1 1.5291 -1.6758 -1.3587 24 1 1.8490 -0.1017 -2.1313 25 1 3.9403 -0.7794 -3.2109 26 1 5.1890 -1.6611 -2.2986 27 1 3.6287 -2.4405 -2.6526 28 1 3.4284 -2.9419 -0.2964 29 1 4.8402 -2.0108 0.2527 30 1 4.6204 -4.9269 1.4095 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167909630.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:47 Heat of formation + Delta-G solvation = -66.665500 kcal Electronic energy + Delta-G solvation = -13201.952374 eV Core-core repulsion = 10995.879051 eV Total energy + Delta-G solvation = -2206.073323 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.20870 -37.49560 -36.38533 -33.56961 -32.93693 -27.91759 -27.46351 -26.47071 -23.71828 -21.75780 -20.04078 -18.85592 -17.51179 -16.75010 -16.33932 -15.71701 -15.61398 -14.96796 -14.24494 -14.00989 -13.48569 -13.46751 -13.17733 -12.99528 -12.86447 -12.71459 -12.41022 -12.14077 -11.93997 -11.73981 -11.52375 -11.30692 -10.95237 -10.13922 -9.66133 -8.31296 -6.02124 1.32723 1.37249 1.52125 2.06405 2.27073 3.05860 3.10225 3.81604 3.93148 3.96822 4.08669 4.46721 4.64789 4.65492 4.78889 4.83666 4.93017 5.00761 5.09078 5.15025 5.25843 5.35247 5.37940 5.41863 5.48049 5.65584 6.14139 6.47881 7.16408 7.57108 8.07590 8.65541 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.014185 C = 0.010984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.489949 B = 1973.390755 C = 2548.461962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.094 4.094 3 H 0.101 0.899 4 C -0.099 4.099 5 C -0.113 4.113 6 H 0.070 0.930 7 C -0.128 4.128 8 C 0.147 3.853 9 N -0.452 5.452 10 C -0.356 4.356 11 H 0.068 0.932 12 C -0.001 4.001 13 N -0.893 5.893 14 Si 0.987 3.013 15 H -0.275 1.275 16 H -0.274 1.274 17 H -0.262 1.262 18 C 0.432 3.568 19 O -0.651 6.651 20 H 0.039 0.961 21 H 0.044 0.956 22 H 0.098 0.902 23 H 0.056 0.944 24 H 0.109 0.891 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 4.051 -9.613 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.116 4.116 3 H 0.119 0.881 4 C -0.137 4.137 5 C -0.132 4.132 6 H 0.089 0.911 7 C -0.186 4.186 8 C 0.024 3.976 9 N -0.168 5.168 10 C -0.484 4.484 11 H 0.086 0.914 12 C -0.203 4.203 13 N -0.531 5.531 14 Si 0.811 3.189 15 H -0.200 1.200 16 H -0.199 1.199 17 H -0.187 1.187 18 C 0.222 3.778 19 O -0.541 6.541 20 H 0.058 0.942 21 H 0.063 0.937 22 H 0.117 0.883 23 H 0.075 0.925 24 H 0.128 0.872 25 H 0.103 0.897 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.431 3.951 -9.212 10.033 hybrid contribution 0.478 -0.577 1.228 1.438 sum 0.909 3.374 -7.984 8.715 Atomic orbital electron populations 1.21555 0.92214 1.01528 1.02646 1.21124 0.98220 1.00089 0.92117 0.88110 1.21739 0.94320 1.00734 0.96876 1.21635 0.97045 0.98579 0.95958 0.91111 1.21623 1.00534 1.01472 0.94926 1.21307 0.94941 0.97716 0.83619 1.43429 1.27437 1.37828 1.08149 1.19697 1.36137 1.05765 0.86801 0.91443 1.26094 0.98314 0.94215 1.01706 1.70093 1.40744 1.11028 1.31250 0.84979 0.78365 0.77890 0.77702 1.20009 1.19947 1.18660 1.20778 0.80963 0.84384 0.91650 1.90449 1.59546 1.69166 1.34902 0.94212 0.93689 0.88321 0.92484 0.87236 0.89658 0.92737 0.92715 0.91705 0.94306 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.88 71.98 0.64 -3.39 16 2 C -0.09 -3.52 2.95 -11.68 -0.03 -3.56 16 3 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 4 C -0.10 -3.04 4.63 30.73 0.14 -2.90 16 5 C -0.11 -3.78 2.79 -10.71 -0.03 -3.81 16 6 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 7 C -0.13 -3.27 9.20 71.98 0.66 -2.61 16 8 C 0.15 6.82 4.05 86.49 0.35 7.17 16 9 N -0.45 -24.82 2.97 -640.10 -1.90 -26.72 16 10 C -0.36 -21.53 9.03 84.04 0.76 -20.77 16 11 H 0.07 4.41 7.23 -2.91 -0.02 4.39 16 12 C 0.00 -0.08 4.98 84.93 0.42 0.35 16 13 N -0.89 -49.03 10.64 21.67 0.23 -48.80 16 14 Si 0.99 44.12 29.59 68.60 2.03 46.15 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 18 C 0.43 22.75 7.00 87.71 0.61 23.37 16 19 O -0.65 -39.96 15.53 -3.07 -0.05 -40.01 16 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.04 1.63 7.79 -2.39 -0.02 1.61 16 22 H 0.10 2.31 8.14 -2.38 -0.02 2.30 16 23 H 0.06 1.87 8.09 -2.39 -0.02 1.86 16 24 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 3.26 6.76 -2.39 -0.02 3.24 16 29 H 0.04 1.91 7.60 -2.38 -0.02 1.89 16 30 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -71.44 244.44 4.94 -66.50 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.10 Total: 9.03 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: 3.53 Total: -6.15 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -1.67 Total: -75.52 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.05 Total: -40.01 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -71.44 4.94 -66.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167909630.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.164 kcal (2) G-P(sol) polarization free energy of solvation -71.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds