Wall clock time and date at job start Mon Mar 30 2020 02:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.60241 * 2 1 4 4 C 1.53350 * 109.59672 * 239.51252 * 2 1 3 5 5 C 1.53072 * 108.42189 * 172.71179 * 4 2 1 6 6 H 1.09002 * 109.40274 * 288.77240 * 5 4 2 7 7 C 1.53001 * 109.40237 * 169.02770 * 5 4 2 8 8 C 1.50158 * 109.94877 * 48.68856 * 5 4 2 9 9 O 1.21301 * 118.23405 * 162.62175 * 8 5 4 10 10 N 1.33356 * 123.52110 * 342.90732 * 8 5 4 11 11 C 1.37104 * 117.94565 * 181.94262 * 10 8 5 12 12 H 1.07998 * 119.99582 * 22.32136 * 11 10 8 13 13 C 1.38948 * 119.99605 * 202.58980 * 11 10 8 14 14 N 1.31406 * 120.00300 * 16.04011 * 13 11 10 15 15 Si 1.86800 * 119.99722 * 196.03258 * 13 11 10 16 16 H 1.48496 * 109.47215 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46734 * 120.00636 * 15 13 11 18 18 H 1.48495 * 109.47487 * 240.00395 * 15 13 11 19 19 C 1.45745 * 124.10556 * 1.65929 * 10 8 5 20 20 H 1.09002 * 109.46431 * 299.67165 * 1 2 3 21 21 H 1.08999 * 109.47326 * 59.66888 * 1 2 3 22 22 H 1.08996 * 109.47477 * 179.67613 * 1 2 3 23 23 H 1.08998 * 109.67705 * 292.44210 * 4 2 1 24 24 H 1.08995 * 109.67532 * 52.94495 * 4 2 1 25 25 H 1.09005 * 109.46512 * 60.00218 * 7 5 4 26 26 H 1.09000 * 109.46960 * 180.02562 * 7 5 4 27 27 H 1.08993 * 109.46857 * 300.00168 * 7 5 4 28 28 H 0.97004 * 120.00338 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.30147 * 101.52211 * 19 10 8 30 30 H 1.09003 * 109.30307 * 221.09785 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0444 -0.7330 -1.2449 5 6 3.5637 -0.5603 -1.3148 6 1 3.7992 0.4707 -1.5788 7 6 4.1335 -1.4987 -2.3804 8 6 4.1776 -0.8814 0.0175 9 8 5.3685 -1.1079 0.0609 10 7 3.4829 -0.9363 1.1544 11 6 4.1666 -1.2003 2.3131 12 1 5.2271 -1.0043 2.3708 13 6 3.4962 -1.7253 3.4111 14 7 2.3054 -2.2600 3.2599 15 14 4.2878 -1.6711 5.1022 16 1 5.6198 -1.0220 5.0047 17 1 3.4252 -0.8935 6.0278 18 1 4.4473 -3.0541 5.6187 19 6 2.0432 -0.7274 1.2433 20 1 -0.3632 0.5088 0.8930 21 1 -0.3634 0.5190 -0.8870 22 1 -0.3634 -1.0276 -0.0058 23 1 1.7984 -1.7925 -1.1749 24 1 1.5849 -0.3078 -2.1372 25 1 3.6949 -1.2577 -3.3487 26 1 5.2155 -1.3770 -2.4307 27 1 3.8960 -2.5303 -2.1205 28 1 1.8375 -2.6268 4.0264 29 1 1.5436 -1.6925 1.3280 30 1 1.8199 -0.1277 2.1258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167909739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:50 Heat of formation + Delta-G solvation = -46.277485 kcal Electronic energy + Delta-G solvation = -13201.612147 eV Core-core repulsion = 10996.422914 eV Total energy + Delta-G solvation = -2205.189233 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.35688 -35.66137 -34.54629 -31.82337 -31.05595 -26.34821 -25.76168 -24.65192 -22.00609 -20.20573 -18.24638 -16.86901 -15.59568 -14.83787 -14.44869 -14.13640 -13.85885 -13.20719 -12.56941 -12.36237 -12.15959 -11.82626 -11.68566 -11.31176 -11.23876 -11.00995 -10.52415 -10.32785 -10.31791 -10.13049 -9.92819 -9.81342 -8.92674 -8.12896 -7.56517 -6.21754 -3.82565 3.18651 3.28714 3.36544 4.03032 4.20440 4.93101 5.15049 5.23789 5.38379 5.43117 5.62206 5.87271 6.01636 6.04466 6.15857 6.20149 6.30254 6.32396 6.41867 6.60272 6.67582 6.69549 6.81409 7.03697 7.43827 7.66304 8.29562 8.56398 9.28513 9.59576 10.10367 10.77489 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037757 B = 0.014188 C = 0.010977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.413998 B = 1972.987459 C = 2550.107868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.099 4.099 6 H 0.080 0.920 7 C -0.127 4.127 8 C 0.451 3.549 9 O -0.600 6.600 10 N -0.438 5.438 11 C -0.310 4.310 12 H 0.100 0.900 13 C 0.030 3.970 14 N -0.883 5.883 15 Si 0.923 3.077 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.142 3.858 20 H 0.053 0.947 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.265 0.735 29 H 0.088 0.912 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 3.386 -5.610 8.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.139 4.139 3 H 0.083 0.917 4 C -0.145 4.145 5 C -0.120 4.120 6 H 0.098 0.902 7 C -0.184 4.184 8 C 0.239 3.761 9 O -0.487 6.487 10 N -0.155 5.155 11 C -0.438 4.438 12 H 0.118 0.882 13 C -0.173 4.173 14 N -0.522 5.522 15 Si 0.750 3.250 16 H -0.193 1.193 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.018 3.982 20 H 0.073 0.927 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.765 3.188 -5.451 7.911 hybrid contribution 0.104 0.006 0.928 0.934 sum -4.661 3.194 -4.523 7.238 Atomic orbital electron populations 1.21662 0.94880 1.01818 1.00948 1.21668 0.95818 0.99747 0.96666 0.91699 1.21734 0.94424 1.01049 0.97326 1.21038 0.95274 1.00622 0.95097 0.90152 1.21557 1.01516 0.99021 0.96350 1.19477 0.87734 0.84020 0.84875 1.90500 1.16109 1.55446 1.86595 1.43093 1.06709 1.59675 1.06056 1.19778 0.95523 1.40362 0.88106 0.88234 1.25312 0.96300 0.95411 1.00267 1.69998 1.14290 1.37136 1.30824 0.85909 0.79366 0.77934 0.81784 1.19264 1.20720 1.20826 1.21347 0.81825 1.00899 0.94119 0.92742 0.93228 0.92514 0.91535 0.92213 0.93130 0.91838 0.92868 0.92445 0.89454 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.19 37.16 0.34 -1.63 16 2 C -0.12 -2.14 2.79 -90.48 -0.25 -2.39 16 3 H 0.06 1.14 8.13 -51.93 -0.42 0.72 16 4 C -0.11 -1.83 4.63 -26.51 -0.12 -1.95 16 5 C -0.10 -1.93 2.94 -92.00 -0.27 -2.20 16 6 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 7 C -0.13 -2.22 8.90 37.16 0.33 -1.89 16 8 C 0.45 11.59 7.00 -11.88 -0.08 11.50 16 9 O -0.60 -17.61 15.54 5.54 0.09 -17.53 16 10 N -0.44 -11.66 2.97 -116.01 -0.34 -12.00 16 11 C -0.31 -8.96 9.04 -14.93 -0.13 -9.09 16 12 H 0.10 3.04 7.22 -52.49 -0.38 2.66 16 13 C 0.03 0.81 5.01 -17.47 -0.09 0.72 16 14 N -0.88 -23.97 10.58 55.50 0.59 -23.38 16 15 Si 0.92 21.27 29.58 -169.99 -5.03 16.24 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 19 C 0.14 3.25 4.02 -4.49 -0.02 3.24 16 20 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 1.17 7.79 -51.93 -0.40 0.77 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 29 H 0.09 2.16 6.74 -51.93 -0.35 1.81 16 30 H 0.06 1.46 7.60 -51.93 -0.39 1.06 16 LS Contribution 244.39 15.07 3.68 3.68 Total: -1.00 -31.24 244.39 -5.78 -37.01 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.46 Total: -0.34 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.30 Total: -3.69 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.24 Total: -35.38 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.09 Total: -17.53 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -31.24 -5.78 -37.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167909739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.263 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds