Wall clock time and date at job start Mon Mar 30 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.60241 * 2 1 4 4 C 1.53350 * 109.59672 * 239.51252 * 2 1 3 5 5 C 1.53072 * 108.42189 * 172.71179 * 4 2 1 6 6 H 1.09002 * 109.40274 * 288.77240 * 5 4 2 7 7 C 1.53001 * 109.40237 * 169.02770 * 5 4 2 8 8 C 1.50158 * 109.94877 * 48.68856 * 5 4 2 9 9 O 1.21301 * 118.23405 * 162.62175 * 8 5 4 10 10 N 1.33356 * 123.52110 * 342.90732 * 8 5 4 11 11 C 1.37104 * 117.94565 * 181.94262 * 10 8 5 12 12 H 1.07998 * 119.99582 * 22.32136 * 11 10 8 13 13 C 1.38948 * 119.99605 * 202.58980 * 11 10 8 14 14 N 1.31406 * 120.00300 * 16.04011 * 13 11 10 15 15 Si 1.86800 * 119.99722 * 196.03258 * 13 11 10 16 16 H 1.48496 * 109.47215 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46734 * 120.00636 * 15 13 11 18 18 H 1.48495 * 109.47487 * 240.00395 * 15 13 11 19 19 C 1.45745 * 124.10556 * 1.65929 * 10 8 5 20 20 H 1.09002 * 109.46431 * 299.67165 * 1 2 3 21 21 H 1.08999 * 109.47326 * 59.66888 * 1 2 3 22 22 H 1.08996 * 109.47477 * 179.67613 * 1 2 3 23 23 H 1.08998 * 109.67705 * 292.44210 * 4 2 1 24 24 H 1.08995 * 109.67532 * 52.94495 * 4 2 1 25 25 H 1.09005 * 109.46512 * 60.00218 * 7 5 4 26 26 H 1.09000 * 109.46960 * 180.02562 * 7 5 4 27 27 H 1.08993 * 109.46857 * 300.00168 * 7 5 4 28 28 H 0.97004 * 120.00338 * 179.97438 * 14 13 11 29 29 H 1.09002 * 109.30147 * 101.52211 * 19 10 8 30 30 H 1.09003 * 109.30307 * 221.09785 * 19 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8957 1.0268 0.0000 4 6 2.0444 -0.7330 -1.2449 5 6 3.5637 -0.5603 -1.3148 6 1 3.7992 0.4707 -1.5788 7 6 4.1335 -1.4987 -2.3804 8 6 4.1776 -0.8814 0.0175 9 8 5.3685 -1.1079 0.0609 10 7 3.4829 -0.9363 1.1544 11 6 4.1666 -1.2003 2.3131 12 1 5.2271 -1.0043 2.3708 13 6 3.4962 -1.7253 3.4111 14 7 2.3054 -2.2600 3.2599 15 14 4.2878 -1.6711 5.1022 16 1 5.6198 -1.0220 5.0047 17 1 3.4252 -0.8935 6.0278 18 1 4.4473 -3.0541 5.6187 19 6 2.0432 -0.7274 1.2433 20 1 -0.3632 0.5088 0.8930 21 1 -0.3634 0.5190 -0.8870 22 1 -0.3634 -1.0276 -0.0058 23 1 1.7984 -1.7925 -1.1749 24 1 1.5849 -0.3078 -2.1372 25 1 3.6949 -1.2577 -3.3487 26 1 5.2155 -1.3770 -2.4307 27 1 3.8960 -2.5303 -2.1205 28 1 1.8375 -2.6268 4.0264 29 1 1.5436 -1.6925 1.3280 30 1 1.8199 -0.1277 2.1258 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167909739.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:49 Heat of formation + Delta-G solvation = -66.575971 kcal Electronic energy + Delta-G solvation = -13202.492355 eV Core-core repulsion = 10996.422914 eV Total energy + Delta-G solvation = -2206.069441 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.20728 -37.49535 -36.38434 -33.56801 -32.93697 -27.91723 -27.46338 -26.46389 -23.72225 -21.75890 -20.03781 -18.85545 -17.51449 -16.74839 -16.33343 -15.71878 -15.61229 -14.96483 -14.24656 -14.00933 -13.48594 -13.46116 -13.17051 -12.99683 -12.86111 -12.71752 -12.41159 -12.14014 -11.93496 -11.74134 -11.52112 -11.30622 -10.95257 -10.13966 -9.66374 -8.30565 -6.02370 1.32845 1.37215 1.52083 2.06415 2.27021 3.06382 3.10203 3.81902 3.93418 3.96885 4.08807 4.46833 4.64885 4.65481 4.79049 4.83795 4.93420 5.00894 5.09081 5.15113 5.26099 5.35754 5.37943 5.41885 5.47980 5.66113 6.14155 6.48039 7.16435 7.57218 8.07479 8.65888 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.037757 B = 0.014188 C = 0.010977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.413998 B = 1972.987459 C = 2550.107868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.114 4.114 3 H 0.070 0.930 4 C -0.099 4.099 5 C -0.094 4.094 6 H 0.101 0.899 7 C -0.122 4.122 8 C 0.432 3.568 9 O -0.651 6.651 10 N -0.452 5.452 11 C -0.355 4.355 12 H 0.068 0.932 13 C -0.002 4.002 14 N -0.894 5.894 15 Si 0.988 3.012 16 H -0.275 1.275 17 H -0.262 1.262 18 H -0.274 1.274 19 C 0.148 3.852 20 H 0.053 0.947 21 H 0.084 0.916 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.109 0.891 25 H 0.098 0.902 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.273 0.727 29 H 0.065 0.935 30 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 4.068 -6.570 10.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.133 4.133 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.115 4.115 6 H 0.118 0.882 7 C -0.179 4.179 8 C 0.222 3.778 9 O -0.541 6.541 10 N -0.169 5.169 11 C -0.483 4.483 12 H 0.086 0.914 13 C -0.203 4.203 14 N -0.532 5.532 15 Si 0.811 3.189 16 H -0.200 1.200 17 H -0.187 1.187 18 H -0.199 1.199 19 C 0.025 3.975 20 H 0.072 0.928 21 H 0.103 0.897 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.128 0.872 25 H 0.117 0.883 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.576 3.871 -6.420 9.972 hybrid contribution 0.667 -0.241 1.252 1.439 sum -5.909 3.630 -5.168 8.649 Atomic orbital electron populations 1.21625 0.91902 1.02312 1.02716 1.21648 0.98126 0.99185 0.94310 0.91122 1.21735 0.92342 1.00807 0.98760 1.21116 0.96977 1.02085 0.91372 0.88152 1.21555 1.00632 0.97813 0.97938 1.20766 0.87405 0.82746 0.86839 1.90451 1.18459 1.57484 1.87685 1.43421 1.08116 1.59410 1.05905 1.19712 0.94895 1.43249 0.90488 0.91430 1.26095 0.96840 0.94167 1.03247 1.70085 1.14797 1.36204 1.32118 0.84969 0.78331 0.78316 0.77259 1.20021 1.18686 1.19926 1.21304 0.79757 1.00062 0.96401 0.92773 0.89683 0.92690 0.92468 0.87248 0.88307 0.93689 0.94197 0.91688 0.91654 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 9.19 71.98 0.66 -2.62 16 2 C -0.11 -3.80 2.79 -10.70 -0.03 -3.83 16 3 H 0.07 2.30 8.13 -2.39 -0.02 2.29 16 4 C -0.10 -3.04 4.63 30.74 0.14 -2.89 16 5 C -0.09 -3.52 2.94 -11.69 -0.03 -3.56 16 6 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 7 C -0.12 -4.02 8.90 71.98 0.64 -3.38 16 8 C 0.43 22.76 7.00 87.71 0.61 23.38 16 9 O -0.65 -39.95 15.54 -3.10 -0.05 -40.00 16 10 N -0.45 -24.83 2.97 -640.13 -1.90 -26.73 16 11 C -0.36 -21.49 9.04 84.04 0.76 -20.73 16 12 H 0.07 4.41 7.22 -2.91 -0.02 4.39 16 13 C 0.00 -0.09 5.01 84.93 0.43 0.33 16 14 N -0.89 -49.04 10.58 21.66 0.23 -48.82 16 15 Si 0.99 44.16 29.58 68.60 2.03 46.19 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 C 0.15 6.86 4.02 86.49 0.35 7.20 16 20 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 24 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 26 H 0.04 1.63 7.79 -2.39 -0.02 1.61 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.07 3.29 6.74 -2.39 -0.02 3.27 16 30 H 0.04 1.90 7.60 -2.39 -0.02 1.88 16 Total: -1.00 -71.37 244.39 4.94 -66.43 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.10 Total: 9.04 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 3.53 Total: -6.11 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -1.67 Total: -75.55 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -0.05 Total: -40.00 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -71.37 4.94 -66.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167909739.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.145 kcal (2) G-P(sol) polarization free energy of solvation -71.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds