Wall clock time and date at job start Mon Mar 30 2020 02:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 N 1.46904 * 109.47141 * 239.99987 * 2 1 3 13 13 C 1.46833 * 110.99760 * 184.68763 * 12 2 1 14 14 C 1.53306 * 109.39529 * 170.24757 * 13 12 2 15 15 C 1.51437 * 108.24371 * 53.79075 * 14 13 12 16 16 O 1.20758 * 121.10574 * 130.99116 * 15 14 13 17 17 C 1.51427 * 117.77996 * 310.97400 * 15 14 13 18 18 C 1.46826 * 111.00058 * 60.00204 * 12 2 1 19 19 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 20 20 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 22 22 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 23 23 H 1.09003 * 109.48121 * 290.22036 * 13 12 2 24 24 H 1.08994 * 109.48528 * 50.27281 * 13 12 2 25 25 H 1.09002 * 109.70633 * 294.10278 * 14 13 12 26 26 H 1.08995 * 109.70422 * 173.48174 * 14 13 12 27 27 H 1.09005 * 109.70602 * 289.33955 * 17 15 14 28 28 H 1.08998 * 109.71148 * 168.71673 * 17 15 14 29 29 H 1.08997 * 109.48187 * 309.73177 * 18 12 2 30 30 H 1.09001 * 109.48340 * 69.77282 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.6255 -0.5556 4.4149 10 1 1.3363 -0.9505 5.1107 11 1 2.4747 -2.5706 3.7106 12 7 2.0197 -0.6925 -1.1995 13 6 3.4832 -0.8098 -1.1786 14 6 3.9354 -1.7412 -2.3093 15 6 3.3488 -1.2294 -3.6083 16 8 4.0374 -1.0853 -4.5898 17 6 1.8699 -0.9049 -3.6354 18 6 1.5489 -0.0267 -2.4205 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 0.7136 1.1647 3.4844 23 1 3.9288 0.1750 -1.3187 24 1 3.8014 -1.2203 -0.2204 25 1 3.5774 -2.7528 -2.1176 26 1 5.0235 -1.7415 -2.3721 27 1 1.2903 -1.8267 -3.5860 28 1 1.6284 -0.3668 -4.5520 29 1 0.4718 0.1279 -2.3581 30 1 2.0491 0.9361 -2.5255 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168951041.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:24 Heat of formation + Delta-G solvation = -55.962698 kcal Electronic energy + Delta-G solvation = -12879.976897 eV Core-core repulsion = 10674.367682 eV Total energy + Delta-G solvation = -2205.609215 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.87661 -38.74191 -35.32239 -32.87834 -32.24172 -29.47022 -27.37483 -24.33273 -23.92571 -21.63556 -19.94864 -18.32462 -17.52266 -16.40049 -16.33839 -15.87214 -15.77861 -15.16336 -15.14894 -14.47829 -13.74438 -13.40971 -12.96873 -12.84059 -12.75084 -12.52424 -12.35270 -12.26195 -11.98693 -11.97687 -11.48359 -10.92051 -10.53979 -10.29580 -9.00232 -8.09228 -6.20570 0.92476 1.45061 1.46961 1.56582 2.44414 3.10283 3.20088 3.33087 3.90733 4.08108 4.11733 4.29547 4.47593 4.64154 4.77215 4.84325 4.93219 5.00420 5.04347 5.08403 5.15367 5.29455 5.53812 5.73891 5.82436 6.28310 6.31461 6.49333 6.70767 6.93701 7.48660 8.96845 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.054971 B = 0.010051 C = 0.008851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.235847 B = 2785.225922 C = 3162.842519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.215 3.785 3 H -0.037 1.037 4 C -0.518 4.518 5 H 0.066 0.934 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.265 1.265 12 N -0.538 5.538 13 C 0.067 3.933 14 C -0.156 4.156 15 C 0.368 3.632 16 O -0.501 6.501 17 C -0.153 4.153 18 C 0.054 3.946 19 H 0.034 0.966 20 H 0.036 0.964 21 H 0.058 0.942 22 H 0.261 0.739 23 H 0.013 0.987 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -4.090 -7.137 8.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.109 3.891 3 H -0.020 1.020 4 C -0.556 4.556 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.263 5.263 13 C -0.061 4.061 14 C -0.194 4.194 15 C 0.247 3.753 16 O -0.378 6.378 17 C -0.191 4.191 18 C -0.075 4.075 19 H 0.053 0.947 20 H 0.055 0.945 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.031 0.969 24 H 0.105 0.895 25 H 0.138 0.862 26 H 0.115 0.885 27 H 0.141 0.859 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 1.481 -4.366 -7.504 8.807 hybrid contribution 0.476 0.801 1.120 1.457 sum 1.957 -3.565 -6.384 7.570 Atomic orbital electron populations 1.21680 0.96903 0.99641 0.99873 1.19045 0.92947 0.90205 0.86939 1.01976 1.21455 1.31227 1.12266 0.90692 0.91559 1.25704 0.95378 0.95763 1.01934 1.70023 1.37940 1.24109 1.24008 0.85549 0.77787 0.79274 0.78979 1.20479 1.21263 1.18979 1.61905 1.09663 1.52479 1.02225 1.21943 0.88283 0.96801 0.99069 1.22389 1.02070 1.02224 0.92709 1.25325 0.91617 0.70311 0.88050 1.90353 1.65035 1.43697 1.38752 1.22350 0.94133 1.03379 0.99201 1.22142 1.01899 0.94170 0.89260 0.94697 0.94458 0.92339 0.93025 0.96903 0.89486 0.86188 0.88540 0.85903 0.88050 0.88942 0.96455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.76 71.98 0.63 -5.04 16 2 C 0.22 10.40 2.07 44.17 0.09 10.49 16 3 H -0.04 -2.05 8.14 -2.39 -0.02 -2.06 16 4 C -0.52 -26.99 7.80 25.60 0.20 -26.79 16 5 H 0.07 3.36 6.41 -2.92 -0.02 3.35 16 6 C 0.01 0.58 5.30 84.66 0.45 1.03 16 7 N -0.92 -51.66 11.33 21.45 0.24 -51.42 16 8 Si 0.96 42.17 29.54 68.60 2.03 44.19 16 9 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 N -0.54 -21.09 4.44 -874.52 -3.88 -24.97 16 13 C 0.07 2.44 5.28 86.42 0.46 2.90 16 14 C -0.16 -4.46 6.35 30.19 0.19 -4.27 16 15 C 0.37 11.03 6.80 29.57 0.20 11.23 16 16 O -0.50 -17.52 17.91 -1.44 -0.03 -17.55 16 17 C -0.15 -4.03 6.35 30.18 0.19 -3.83 16 18 C 0.05 1.76 5.32 86.42 0.46 2.22 16 19 H 0.03 1.39 6.21 -2.38 -0.01 1.37 16 20 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.06 3.03 6.08 -2.39 -0.01 3.02 16 22 H 0.26 13.98 8.31 -92.71 -0.77 13.20 16 23 H 0.01 0.48 8.10 -2.39 -0.02 0.47 16 24 H 0.09 3.39 5.90 -2.39 -0.01 3.38 16 25 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 26 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.12 2.82 8.14 -2.38 -0.02 2.80 16 28 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.09 2.92 5.84 -2.39 -0.01 2.91 16 30 H 0.02 0.60 8.10 -2.39 -0.02 0.58 16 Total: -1.00 -59.40 242.35 2.35 -57.05 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.12 Total: 4.75 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 2.87 Total: -12.06 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.64 Total: -76.38 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.03 Total: -17.55 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -59.40 2.35 -57.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168951041.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.085 kcal (2) G-P(sol) polarization free energy of solvation -59.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds