Wall clock time and date at job start Mon Mar 30 2020 02:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21281 * 119.99849 * 2 1 4 4 N 1.34774 * 120.00070 * 180.02562 * 2 1 3 5 5 C 1.47484 * 127.03387 * 0.02562 * 4 2 1 6 6 C 1.54007 * 107.08285 * 154.50986 * 5 4 2 7 7 C 1.54611 * 105.04344 * 1.30849 * 6 5 4 8 8 C 1.53002 * 110.73830 * 263.32628 * 7 6 5 9 9 C 1.50699 * 110.74144 * 140.18510 * 7 6 5 10 10 H 1.08000 * 119.99920 * 0.02562 * 9 7 6 11 11 C 1.37876 * 120.00462 * 179.97438 * 9 7 6 12 12 N 1.31512 * 119.99706 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 120.00016 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46933 * 60.00496 * 13 11 9 15 15 H 1.48508 * 109.46755 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47014 * 300.00058 * 13 11 9 17 17 C 1.48118 * 127.03156 * 179.97438 * 4 2 1 18 18 H 1.08998 * 109.47499 * 269.99213 * 1 2 3 19 19 H 1.09004 * 109.47545 * 29.99473 * 1 2 3 20 20 H 1.08999 * 109.47156 * 149.99473 * 1 2 3 21 21 H 1.09000 * 109.91322 * 35.14794 * 5 4 2 22 22 H 1.08997 * 109.91328 * 273.87427 * 5 4 2 23 23 H 1.09004 * 110.32250 * 120.19906 * 6 5 4 24 24 H 1.08993 * 110.32463 * 242.41201 * 6 5 4 25 25 H 1.09005 * 109.46760 * 60.00772 * 8 7 6 26 26 H 1.08998 * 109.47298 * 179.97438 * 8 7 6 27 27 H 1.08990 * 109.47449 * 300.00356 * 8 7 6 28 28 H 0.97003 * 119.99950 * 179.97438 * 12 11 9 29 29 H 1.08996 * 110.66106 * 100.89622 * 17 4 2 30 30 H 1.08999 * 110.80476 * 337.84373 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.6054 -2.5251 -0.0017 6 6 2.6526 -3.4597 -0.6354 7 6 3.8602 -2.5495 -0.9573 8 6 3.8231 -2.0967 -2.4184 9 6 5.1565 -3.2549 -0.6522 10 1 5.1445 -4.2623 -0.2633 11 6 6.3579 -2.6145 -0.8705 12 7 6.3726 -1.3879 -1.3446 13 14 7.9647 -3.4888 -0.4915 14 1 8.0619 -4.7230 -1.3114 15 1 9.1038 -2.5909 -0.8105 16 1 8.0055 -3.8468 0.9490 17 6 3.6509 -1.3485 -0.0011 18 1 -0.3634 -0.0001 1.0276 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5139 21 1 0.6892 -2.5396 -0.5920 22 1 1.3964 -2.8406 1.0205 23 1 2.9425 -4.2377 0.0709 24 1 2.2593 -3.9044 -1.5494 25 1 2.9041 -1.5404 -2.6030 26 1 4.6818 -1.4571 -2.6225 27 1 3.8567 -2.9695 -3.0702 28 1 7.2178 -0.9372 -1.4978 29 1 4.0094 -1.5871 1.0001 30 1 4.1505 -0.4592 -0.3854 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000204704669.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:40 Heat of formation + Delta-G solvation = -41.847536 kcal Electronic energy + Delta-G solvation = -13063.244338 eV Core-core repulsion = 10858.247203 eV Total energy + Delta-G solvation = -2204.997136 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.21655 -36.93022 -33.37128 -31.10790 -29.25471 -28.45169 -25.45257 -24.61532 -22.38156 -18.81903 -18.50644 -16.56819 -16.03365 -15.03754 -14.60948 -14.49355 -13.69524 -12.91855 -12.71396 -12.34909 -12.14636 -11.76981 -11.55560 -11.34606 -11.09071 -10.88214 -10.65116 -10.52522 -10.07854 -9.61196 -9.33905 -9.16832 -8.81933 -8.49118 -7.80508 -6.02827 -4.13420 3.24788 3.29409 3.35326 3.36424 3.80009 4.38756 5.13440 5.24209 5.40355 5.55013 5.59279 5.77255 5.91219 5.97593 6.30411 6.45993 6.67583 6.79082 6.92569 7.01813 7.05528 7.19688 7.44647 7.64732 7.77571 8.15493 8.37750 8.39102 8.82200 8.88775 9.52778 11.00041 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053855 B = 0.011066 C = 0.010181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.793923 B = 2529.659381 C = 2749.600632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.517 3.483 3 O -0.561 6.561 4 N -0.618 5.618 5 C 0.103 3.897 6 C -0.128 4.128 7 C 0.067 3.933 8 C -0.127 4.127 9 C -0.511 4.511 10 H 0.059 0.941 11 C 0.066 3.934 12 N -0.881 5.881 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.121 3.879 18 H 0.085 0.915 19 H 0.085 0.915 20 H 0.075 0.925 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.008 0.992 26 H 0.089 0.911 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.054 0.946 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.877 -2.677 1.620 9.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.306 3.694 3 O -0.441 6.441 4 N -0.351 5.351 5 C -0.020 4.020 6 C -0.166 4.166 7 C 0.066 3.934 8 C -0.185 4.185 9 C -0.550 4.550 10 H 0.077 0.923 11 C -0.136 4.136 12 N -0.519 5.519 13 Si 0.721 3.279 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.000 4.000 18 H 0.104 0.896 19 H 0.104 0.896 20 H 0.094 0.906 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.476 -1.881 1.569 8.823 hybrid contribution 0.813 -0.553 0.229 1.009 sum -7.664 -2.434 1.798 8.239 Atomic orbital electron populations 1.21868 0.93006 1.04094 1.03875 1.20268 0.89773 0.82647 0.76703 1.90682 1.70832 1.30798 1.51766 1.49232 1.10235 1.04785 1.70875 1.22086 0.97124 0.83130 0.99692 1.22676 0.96467 0.97886 0.99558 1.19121 0.91796 0.90295 0.92214 1.21752 1.00328 0.99753 0.96664 1.20975 0.89605 1.00382 1.43990 0.92266 1.25008 0.99163 0.94879 0.94592 1.69851 1.26446 1.11595 1.43964 0.86634 0.82970 0.79434 0.78816 1.20280 1.21276 1.20259 1.22904 0.75890 1.01672 0.99564 0.89614 0.89613 0.90608 0.92252 0.92656 0.91476 0.92391 0.97295 0.89236 0.95469 0.92680 0.92748 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 9.94 36.00 0.36 -1.93 16 2 C 0.52 10.35 8.00 -10.99 -0.09 10.26 16 3 O -0.56 -13.73 17.31 5.56 0.10 -13.64 16 4 N -0.62 -12.61 3.20 -169.77 -0.54 -13.16 16 5 C 0.10 1.73 6.74 -2.98 -0.02 1.71 16 6 C -0.13 -2.44 6.08 -25.36 -0.15 -2.60 16 7 C 0.07 1.58 0.58 -153.79 -0.09 1.49 16 8 C -0.13 -3.07 8.27 37.16 0.31 -2.76 16 9 C -0.51 -13.25 8.01 -34.44 -0.28 -13.53 16 10 H 0.06 1.50 7.55 -52.49 -0.40 1.11 16 11 C 0.07 1.76 5.21 -17.82 -0.09 1.67 16 12 N -0.88 -24.42 10.29 55.43 0.57 -23.85 16 13 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 C 0.12 2.91 5.45 -2.13 -0.01 2.90 16 18 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 19 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 20 H 0.08 0.88 6.60 -51.93 -0.34 0.53 16 21 H 0.06 0.83 6.79 -51.93 -0.35 0.48 16 22 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.07 1.25 7.67 -51.93 -0.40 0.85 16 24 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16 25 H 0.01 0.19 8.08 -51.93 -0.42 -0.23 16 26 H 0.09 2.41 5.85 -51.93 -0.30 2.10 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.05 1.34 8.04 -51.93 -0.42 0.92 16 30 H 0.09 2.39 7.29 -51.93 -0.38 2.01 16 LS Contribution 246.55 15.07 3.72 3.72 Total: -1.00 -29.83 246.55 -5.49 -35.32 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.24 Total: -1.23 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.07 Total: -2.80 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.03 Total: -37.01 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.10 Total: -13.64 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.83 -5.49 -35.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204704669.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.528 kcal (2) G-P(sol) polarization free energy of solvation -29.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds