Wall clock time and date at job start Mon Mar 30 2020 02:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21281 * 119.99849 * 2 1 4 4 N 1.34774 * 120.00070 * 180.02562 * 2 1 3 5 5 C 1.47484 * 127.03387 * 0.02562 * 4 2 1 6 6 C 1.54007 * 107.08285 * 154.50986 * 5 4 2 7 7 C 1.54611 * 105.04344 * 1.30849 * 6 5 4 8 8 C 1.53002 * 110.73830 * 263.32628 * 7 6 5 9 9 C 1.50699 * 110.74144 * 140.18510 * 7 6 5 10 10 H 1.08000 * 119.99920 * 0.02562 * 9 7 6 11 11 C 1.37876 * 120.00462 * 179.97438 * 9 7 6 12 12 N 1.31512 * 119.99706 * 0.02562 * 11 9 7 13 13 Si 1.86804 * 120.00016 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46933 * 60.00496 * 13 11 9 15 15 H 1.48508 * 109.46755 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47014 * 300.00058 * 13 11 9 17 17 C 1.48118 * 127.03156 * 179.97438 * 4 2 1 18 18 H 1.08998 * 109.47499 * 269.99213 * 1 2 3 19 19 H 1.09004 * 109.47545 * 29.99473 * 1 2 3 20 20 H 1.08999 * 109.47156 * 149.99473 * 1 2 3 21 21 H 1.09000 * 109.91322 * 35.14794 * 5 4 2 22 22 H 1.08997 * 109.91328 * 273.87427 * 5 4 2 23 23 H 1.09004 * 110.32250 * 120.19906 * 6 5 4 24 24 H 1.08993 * 110.32463 * 242.41201 * 6 5 4 25 25 H 1.09005 * 109.46760 * 60.00772 * 8 7 6 26 26 H 1.08998 * 109.47298 * 179.97438 * 8 7 6 27 27 H 1.08990 * 109.47449 * 300.00356 * 8 7 6 28 28 H 0.97003 * 119.99950 * 179.97438 * 12 11 9 29 29 H 1.08996 * 110.66106 * 100.89622 * 17 4 2 30 30 H 1.08999 * 110.80476 * 337.84373 * 17 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.6054 -2.5251 -0.0017 6 6 2.6526 -3.4597 -0.6354 7 6 3.8602 -2.5495 -0.9573 8 6 3.8231 -2.0967 -2.4184 9 6 5.1565 -3.2549 -0.6522 10 1 5.1445 -4.2623 -0.2633 11 6 6.3579 -2.6145 -0.8705 12 7 6.3726 -1.3879 -1.3446 13 14 7.9647 -3.4888 -0.4915 14 1 8.0619 -4.7230 -1.3114 15 1 9.1038 -2.5909 -0.8105 16 1 8.0055 -3.8468 0.9490 17 6 3.6509 -1.3485 -0.0011 18 1 -0.3634 -0.0001 1.0276 19 1 -0.3634 0.8900 -0.5138 20 1 -0.3633 -0.8899 -0.5139 21 1 0.6892 -2.5396 -0.5920 22 1 1.3964 -2.8406 1.0205 23 1 2.9425 -4.2377 0.0709 24 1 2.2593 -3.9044 -1.5494 25 1 2.9041 -1.5404 -2.6030 26 1 4.6818 -1.4571 -2.6225 27 1 3.8567 -2.9695 -3.0702 28 1 7.2178 -0.9372 -1.4978 29 1 4.0094 -1.5871 1.0001 30 1 4.1505 -0.4592 -0.3854 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000204704669.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:40 Heat of formation + Delta-G solvation = -61.384476 kcal Electronic energy + Delta-G solvation = -13064.091523 eV Core-core repulsion = 10858.247203 eV Total energy + Delta-G solvation = -2205.844321 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.83868 -38.63866 -35.22580 -32.89729 -30.59101 -30.06449 -27.42426 -26.43889 -23.92755 -20.65933 -20.04425 -18.32927 -17.70075 -16.71101 -16.42632 -16.11301 -15.19254 -14.61497 -14.49121 -13.99505 -13.38782 -13.20713 -13.12922 -13.03800 -12.86957 -12.72972 -12.48848 -12.27946 -11.99074 -11.32206 -11.08641 -10.88172 -10.70730 -10.47456 -9.47621 -8.04397 -6.21357 1.44686 1.45330 1.52654 1.73177 2.27400 2.46289 3.20563 3.81184 4.08829 4.31493 4.33504 4.58727 4.65739 4.70866 4.76329 4.88364 5.04993 5.14890 5.16406 5.23400 5.28830 5.38518 5.54834 5.67528 5.83738 6.19718 6.40077 6.82580 6.89811 7.28333 7.48257 8.96369 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053855 B = 0.011066 C = 0.010181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.793923 B = 2529.659381 C = 2749.600632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.504 3.496 3 O -0.620 6.620 4 N -0.622 5.622 5 C 0.104 3.896 6 C -0.122 4.122 7 C 0.052 3.948 8 C -0.117 4.117 9 C -0.521 4.521 10 H 0.063 0.937 11 C 0.017 3.983 12 N -0.911 5.911 13 Si 0.952 3.048 14 H -0.269 1.269 15 H -0.292 1.292 16 H -0.272 1.272 17 C 0.130 3.870 18 H 0.114 0.886 19 H 0.094 0.906 20 H 0.105 0.895 21 H 0.101 0.899 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.015 0.985 26 H 0.054 0.946 27 H 0.034 0.966 28 H 0.258 0.742 29 H 0.038 0.962 30 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 -4.415 2.049 12.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.296 3.704 3 O -0.504 6.504 4 N -0.354 5.354 5 C -0.017 4.017 6 C -0.160 4.160 7 C 0.051 3.949 8 C -0.175 4.175 9 C -0.559 4.559 10 H 0.082 0.918 11 C -0.183 4.183 12 N -0.549 5.549 13 Si 0.778 3.222 14 H -0.194 1.194 15 H -0.218 1.218 16 H -0.197 1.197 17 C 0.007 3.993 18 H 0.132 0.868 19 H 0.113 0.887 20 H 0.124 0.876 21 H 0.119 0.881 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.034 0.966 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.678 -3.665 2.002 11.465 hybrid contribution 1.481 -0.004 0.095 1.484 sum -9.197 -3.669 2.097 10.121 Atomic orbital electron populations 1.21870 0.87027 1.06026 1.06238 1.21587 0.92465 0.81409 0.74985 1.90655 1.72624 1.32887 1.54239 1.49341 1.08598 1.06834 1.70676 1.22315 0.97436 0.80084 1.01904 1.22606 0.94995 0.97648 1.00794 1.19183 0.93240 0.90995 0.91472 1.21592 0.99061 0.99349 0.97465 1.21378 0.90801 1.00584 1.43164 0.91840 1.25754 1.02335 0.95415 0.94764 1.70036 1.26590 1.12987 1.45316 0.85707 0.79256 0.78434 0.78800 1.19384 1.21817 1.19701 1.22428 0.78636 0.99785 0.98424 0.86817 0.88737 0.87602 0.88126 0.90024 0.90915 0.90678 0.96559 0.92753 0.94714 0.93296 0.94334 0.94505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.94 71.23 0.71 -2.80 16 2 C 0.50 19.46 8.00 87.66 0.70 20.16 16 3 O -0.62 -30.99 17.31 -3.03 -0.05 -31.04 16 4 N -0.62 -24.46 3.20 -809.41 -2.59 -27.06 16 5 C 0.10 3.05 6.74 86.53 0.58 3.63 16 6 C -0.12 -4.31 6.08 31.48 0.19 -4.12 16 7 C 0.05 2.46 0.58 -51.72 -0.03 2.43 16 8 C -0.12 -5.65 8.27 71.98 0.60 -5.06 16 9 C -0.52 -26.99 8.01 25.60 0.20 -26.78 16 10 H 0.06 3.16 7.55 -2.91 -0.02 3.13 16 11 C 0.02 0.91 5.21 84.65 0.44 1.35 16 12 N -0.91 -52.45 10.29 21.45 0.22 -52.23 16 13 Si 0.95 42.78 29.54 68.60 2.03 44.80 16 14 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 15 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 C 0.13 6.41 5.45 86.73 0.47 6.88 16 18 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 19 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 20 H 0.11 1.81 6.60 -2.39 -0.02 1.80 16 21 H 0.10 2.18 6.79 -2.39 -0.02 2.16 16 22 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 23 H 0.07 2.47 7.67 -2.38 -0.02 2.45 16 24 H 0.07 2.38 7.86 -2.39 -0.02 2.36 16 25 H 0.02 0.71 8.08 -2.38 -0.02 0.69 16 26 H 0.05 3.02 5.85 -2.39 -0.01 3.01 16 27 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.04 1.96 8.04 -2.39 -0.02 1.94 16 30 H 0.04 2.15 7.29 -2.39 -0.02 2.13 16 Total: -1.00 -68.12 246.55 4.58 -63.53 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: 1.11 Total: 6.30 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 3.87 Total: -4.31 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -2.37 Total: -79.29 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.05 Total: -31.04 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -68.12 4.58 -63.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000204704669.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.150 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds