Wall clock time and date at job start Mon Mar 30 2020 02:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.50690 * 109.52353 * 177.55627 * 5 4 3 7 7 O 1.21437 * 120.00238 * 270.31642 * 6 5 4 8 8 C 1.41035 * 119.99814 * 90.31687 * 6 5 4 9 9 H 1.07998 * 119.99773 * 0.02562 * 8 6 5 10 10 C 1.40462 * 119.99879 * 179.97438 * 8 6 5 11 11 N 1.30522 * 119.99988 * 0.02562 * 10 8 6 12 12 Si 1.86797 * 120.00031 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47133 * 90.00110 * 12 10 8 14 14 H 1.48500 * 109.47462 * 210.00446 * 12 10 8 15 15 H 1.48501 * 109.46940 * 330.00208 * 12 10 8 16 16 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 17 17 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 18 18 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 19 19 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 20 20 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 21 21 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 22 22 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 23 23 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 24 24 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 25 25 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 26 26 H 0.97000 * 119.99853 * 180.02562 * 11 10 8 27 27 H 1.09001 * 109.50326 * 182.41022 * 16 5 4 28 28 H 1.08994 * 109.50594 * 62.28334 * 16 5 4 29 29 H 1.09005 * 109.46673 * 294.18102 * 17 2 1 30 30 H 1.09003 * 109.46587 * 54.14643 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6132 0.4463 0.8433 7 8 6.0981 -0.4760 0.2197 8 6 6.4487 1.4327 1.4074 9 1 6.0175 2.2527 1.9624 10 6 7.8417 1.3479 1.2483 11 7 8.3629 0.3566 0.5780 12 14 8.9483 2.6546 1.9948 13 1 9.3307 2.2517 3.3719 14 1 10.1708 2.8014 1.1645 15 1 8.2232 3.9497 2.0413 16 6 3.5182 -0.8715 1.0210 17 6 1.9952 -0.7707 1.1338 18 1 -0.3634 0.4471 0.9253 19 1 -0.3633 -1.0249 -0.0754 20 1 -0.3633 0.5778 -0.8499 21 1 1.5634 1.9257 -0.8330 22 1 1.7324 1.8608 0.9376 23 1 3.9099 2.3512 -0.1310 24 1 3.7820 0.8572 -1.0905 25 1 3.8886 1.0355 1.9561 26 1 9.3249 0.2978 0.4684 27 1 3.9098 -1.4302 1.8710 28 1 3.7813 -1.3836 0.0955 29 1 1.7324 -0.2708 2.0661 30 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220514598.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:11 Heat of formation + Delta-G solvation = -53.014206 kcal Electronic energy + Delta-G solvation = -12762.143809 eV Core-core repulsion = 10556.662450 eV Total energy + Delta-G solvation = -2205.481359 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.68401 -36.38472 -32.89987 -32.20112 -30.29668 -27.49629 -25.91169 -22.71919 -22.49591 -20.04821 -18.44675 -16.30002 -15.50682 -14.96748 -14.68759 -14.23371 -13.76031 -13.24722 -12.89591 -12.54663 -12.03890 -11.94711 -11.68800 -11.32456 -11.18241 -10.76574 -10.70630 -10.55064 -10.34263 -9.92523 -9.64988 -9.57870 -8.85910 -8.02391 -7.25188 -6.14610 -4.83027 3.07622 3.16209 3.19730 4.07089 4.26694 4.29451 5.26436 5.37999 5.41599 5.50357 5.68377 5.75498 5.86558 5.92874 5.97359 6.05943 6.21849 6.33989 6.50076 6.71715 6.75199 6.95528 7.08102 7.24961 7.31766 7.44134 7.46209 8.15411 8.89678 8.99149 10.42307 10.67400 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.071140 B = 0.008791 C = 0.008319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.495457 B = 3184.136853 C = 3364.818503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.543 5.543 3 C 0.059 3.941 4 C -0.096 4.096 5 C -0.127 4.127 6 C 0.371 3.629 7 O -0.543 6.543 8 C -0.536 4.536 9 H 0.066 0.934 10 C 0.083 3.917 11 N -0.742 5.742 12 Si 0.902 3.098 13 H -0.270 1.270 14 H -0.277 1.277 15 H -0.263 1.263 16 C -0.097 4.097 17 C 0.058 3.942 18 H 0.019 0.981 19 H 0.064 0.936 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.027 0.973 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.272 0.728 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 2.327 1.322 10.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.268 5.268 3 C -0.069 4.069 4 C -0.134 4.134 5 C -0.147 4.147 6 C 0.265 3.735 7 O -0.432 6.432 8 C -0.568 4.568 9 H 0.085 0.915 10 C -0.140 4.140 11 N -0.371 5.371 12 Si 0.726 3.274 13 H -0.195 1.195 14 H -0.203 1.203 15 H -0.187 1.187 16 C -0.135 4.135 17 C -0.069 4.069 18 H 0.038 0.962 19 H 0.082 0.918 20 H 0.082 0.918 21 H 0.085 0.915 22 H 0.046 0.954 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.044 0.956 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.405 1.539 0.506 9.543 hybrid contribution 0.139 1.217 1.280 1.772 sum -9.265 2.756 1.786 9.830 Atomic orbital electron populations 1.22330 0.88314 1.01679 0.99884 1.61913 1.06550 1.14342 1.44025 1.22148 0.96884 0.88394 0.99475 1.21387 0.92089 1.00348 0.99573 1.21708 1.00477 0.94987 0.97552 1.19393 0.86307 0.86425 0.81340 1.90388 1.76387 1.35422 1.40964 1.20850 0.91840 1.10675 1.33459 0.91523 1.26016 0.99057 0.95418 0.93469 1.69959 1.12415 1.26607 1.28108 0.86456 0.79554 0.81763 0.79593 1.19532 1.20262 1.18667 1.21385 0.91542 0.97843 1.02744 1.22160 0.97157 0.97068 0.90562 0.96246 0.91767 0.91790 0.91480 0.95427 0.91524 0.91378 0.92249 0.91742 0.92259 0.90630 0.95584 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 60.07 0.58 0.91 16 2 N -0.54 -8.93 4.91 -242.95 -1.19 -10.12 16 3 C 0.06 0.97 5.46 -3.83 -0.02 0.95 16 4 C -0.10 -1.93 5.36 -26.65 -0.14 -2.07 16 5 C -0.13 -2.88 2.49 -91.65 -0.23 -3.11 16 6 C 0.37 10.50 5.97 -33.25 -0.20 10.30 16 7 O -0.54 -17.40 14.65 5.42 0.08 -17.32 16 8 C -0.54 -15.12 9.20 -37.69 -0.35 -15.47 16 9 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 10 C 0.08 2.29 5.50 -17.27 -0.10 2.20 16 11 N -0.74 -21.88 11.72 55.57 0.65 -21.22 16 12 Si 0.90 19.78 29.56 -169.99 -5.03 14.75 16 13 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 16 C -0.10 -2.02 5.02 -26.65 -0.13 -2.15 16 17 C 0.06 0.98 5.46 -3.83 -0.02 0.96 16 18 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 19 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 20 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 21 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 22 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 26 H 0.27 7.19 8.29 -40.82 -0.34 6.86 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.08 1.73 7.78 -51.93 -0.40 1.33 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 249.53 15.07 3.76 3.76 Total: -1.00 -32.09 249.53 -6.93 -39.02 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -4.59 Total: -1.39 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.61 Total: -7.48 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: -0.54 Total: -31.34 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.08 Total: -17.32 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.09 -6.93 -39.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220514598.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.993 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds