Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.88735 * 2 1 4 4 C 1.54480 * 110.97076 * 123.81527 * 2 1 3 5 5 H 1.09005 * 110.24447 * 211.69874 * 4 2 1 6 6 C 1.52997 * 110.31860 * 333.65889 * 4 2 1 7 7 N 1.46761 * 105.47312 * 92.70192 * 4 2 1 8 8 C 1.37098 * 124.34542 * 196.99713 * 7 4 2 9 9 H 1.08006 * 120.00335 * 148.72972 * 8 7 4 10 10 C 1.38949 * 120.00157 * 328.72513 * 8 7 4 11 11 N 1.31411 * 119.99893 * 349.35388 * 10 8 7 12 12 Si 1.86803 * 120.00161 * 169.35398 * 10 8 7 13 13 H 1.48502 * 109.47261 * 90.00047 * 12 10 8 14 14 H 1.48498 * 109.47165 * 209.99900 * 12 10 8 15 15 H 1.48497 * 109.47133 * 329.99849 * 12 10 8 16 16 C 1.34417 * 111.30462 * 17.01365 * 7 4 2 17 17 O 1.21289 * 124.94125 * 179.63069 * 16 7 4 18 18 C 1.51281 * 110.11601 * 359.59358 * 16 7 4 19 19 H 1.08999 * 110.48497 * 102.55315 * 18 16 7 20 20 C 1.52995 * 110.48654 * 225.06992 * 18 16 7 21 21 H 1.08998 * 109.47821 * 182.35870 * 1 2 3 22 22 H 1.09001 * 109.46991 * 302.35681 * 1 2 3 23 23 H 1.09004 * 109.47669 * 62.35204 * 1 2 3 24 24 H 1.08998 * 109.47184 * 177.54557 * 6 4 2 25 25 H 1.09005 * 109.47339 * 297.54860 * 6 4 2 26 26 H 1.09000 * 109.46965 * 57.54600 * 6 4 2 27 27 H 0.97008 * 120.00048 * 180.02562 * 11 10 8 28 28 H 1.08997 * 109.47433 * 58.54578 * 20 18 16 29 29 H 1.08998 * 109.47475 * 298.54445 * 20 18 16 30 30 H 1.09006 * 109.46994 * 178.54436 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0828 -0.8028 1.1985 5 1 3.0303 -0.3790 1.5314 6 6 1.0723 -0.8060 2.3472 7 7 2.2852 -2.1668 0.6961 8 6 2.4439 -3.2697 1.4949 9 1 2.0964 -4.2351 1.1579 10 6 3.0519 -3.1454 2.7381 11 7 3.6600 -2.0267 3.0633 12 14 3.0051 -4.5685 3.9473 13 1 4.1883 -5.4399 3.7323 14 1 3.0252 -4.0400 5.3349 15 1 1.7647 -5.3571 3.7358 16 6 2.2953 -2.1958 -0.6477 17 8 2.4512 -3.1934 -1.3198 18 6 2.0832 -0.8035 -1.1998 19 1 3.0279 -0.3806 -1.5415 20 6 1.0654 -0.8296 -2.3418 21 1 -0.3635 -1.0267 0.0423 22 1 -0.3633 0.5500 0.8681 23 1 -0.3634 0.4769 -0.9103 24 1 1.4570 -1.4116 3.1678 25 1 0.9122 0.2152 2.6932 26 1 0.1278 -1.2239 1.9991 27 1 4.0848 -1.9400 3.9311 28 1 0.1219 -1.2368 -1.9785 29 1 1.4432 -1.4545 -3.1510 30 1 0.9060 0.1841 -2.7097 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220553843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = -39.596512 kcal Electronic energy + Delta-G solvation = -13408.341730 eV Core-core repulsion = 11203.442206 eV Total energy + Delta-G solvation = -2204.899524 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.67887 -35.58359 -34.19073 -31.36943 -30.40899 -27.28506 -26.45470 -23.93792 -22.24495 -19.37076 -18.46852 -16.72064 -15.69473 -15.04476 -14.27515 -14.14375 -13.52557 -13.05253 -12.92982 -12.21344 -11.76644 -11.71810 -11.68312 -11.34124 -11.14915 -10.81049 -10.65658 -10.58954 -10.38147 -10.16473 -9.91211 -9.64742 -8.93484 -8.20383 -7.51257 -6.29302 -3.91984 3.16979 3.25054 3.29720 3.98421 4.16035 4.99107 5.10914 5.27726 5.33403 5.44595 5.78419 5.94618 5.99078 6.10724 6.21697 6.30751 6.41127 6.50658 6.53049 6.62689 6.67584 6.75208 6.85015 7.34775 7.37228 7.58610 8.11894 8.55779 9.19327 9.37015 10.14547 10.76172 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046646 B = 0.014099 C = 0.012051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.117968 B = 1985.511408 C = 2322.965024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.078 0.922 4 C 0.148 3.852 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.437 5.437 8 C -0.301 4.301 9 H 0.091 0.909 10 C 0.037 3.963 11 N -0.876 5.876 12 Si 0.919 3.081 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.270 1.270 16 C 0.460 3.540 17 O -0.586 6.586 18 C -0.121 4.121 19 H 0.088 0.912 20 C -0.128 4.128 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.043 0.957 27 H 0.267 0.733 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 6.208 -1.387 7.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 H 0.097 0.903 4 C 0.044 3.956 5 H 0.105 0.895 6 C -0.197 4.197 7 N -0.156 5.156 8 C -0.429 4.429 9 H 0.109 0.891 10 C -0.166 4.166 11 N -0.514 5.514 12 Si 0.746 3.254 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.194 1.194 16 C 0.247 3.753 17 O -0.471 6.471 18 C -0.142 4.142 19 H 0.107 0.893 20 C -0.186 4.186 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.095 0.905 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.607 5.726 -1.453 7.492 hybrid contribution 0.183 -0.515 0.789 0.960 sum -4.425 5.210 -0.664 6.868 Atomic orbital electron populations 1.21839 0.95007 1.01828 1.00701 1.22339 0.96032 0.98849 0.95446 0.90317 1.21471 0.98942 0.83482 0.91737 0.89458 1.21948 0.98044 0.99851 0.99810 1.43806 1.60917 1.06656 1.04175 1.19357 1.37215 0.88354 0.97994 0.89104 1.25329 0.94855 0.97607 0.98816 1.69901 1.33376 1.25908 1.22253 0.86044 0.78989 0.81093 0.79293 1.20283 1.20777 1.19440 1.20384 0.82005 0.89522 0.83398 1.90503 1.56245 1.37315 1.63004 1.21852 0.99873 0.96619 0.95906 0.89343 1.21620 0.98838 1.00604 0.97551 0.92426 0.92637 0.93000 0.90499 0.94195 0.93821 0.92261 0.92426 0.92489 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 6.62 37.15 0.25 -1.90 16 2 C -0.11 -1.93 3.55 -88.99 -0.32 -2.24 16 3 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.15 3.28 2.70 -67.01 -0.18 3.10 16 5 H 0.09 2.11 7.15 -51.93 -0.37 1.74 16 6 C -0.14 -2.86 7.68 37.16 0.29 -2.58 16 7 N -0.44 -11.43 2.87 -106.59 -0.31 -11.73 16 8 C -0.30 -8.45 9.12 -14.93 -0.14 -8.59 16 9 H 0.09 2.65 7.85 -52.48 -0.41 2.24 16 10 C 0.04 0.99 4.09 -17.47 -0.07 0.92 16 11 N -0.88 -23.21 10.39 55.50 0.58 -22.63 16 12 Si 0.92 20.67 29.57 -169.99 -5.03 15.64 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.46 11.84 7.40 -10.86 -0.08 11.76 16 17 O -0.59 -17.15 17.53 5.55 0.10 -17.05 16 18 C -0.12 -2.38 3.44 -90.63 -0.31 -2.69 16 19 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 20 C -0.13 -2.16 7.98 37.15 0.30 -1.86 16 21 H 0.06 1.01 7.12 -51.93 -0.37 0.64 16 22 H 0.05 0.79 7.20 -51.93 -0.37 0.42 16 23 H 0.05 0.70 6.91 -51.93 -0.36 0.34 16 24 H 0.08 1.79 5.58 -51.93 -0.29 1.50 16 25 H 0.04 0.70 8.00 -51.93 -0.42 0.29 16 26 H 0.04 0.87 6.45 -51.93 -0.34 0.53 16 27 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 28 H 0.06 0.97 6.47 -51.93 -0.34 0.64 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.70 7.99 -51.93 -0.41 0.29 16 LS Contribution 237.68 15.07 3.58 3.58 Total: -1.00 -30.53 237.68 -5.42 -35.95 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -4.08 Total: 0.33 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.27 Total: -4.09 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: 0.27 Total: -34.36 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.10 Total: -17.05 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -30.53 -5.42 -35.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220553843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.647 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds