Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.88735 * 2 1 4 4 C 1.54480 * 110.97076 * 123.81527 * 2 1 3 5 5 H 1.09005 * 110.24447 * 211.69874 * 4 2 1 6 6 C 1.52997 * 110.31860 * 333.65889 * 4 2 1 7 7 N 1.46761 * 105.47312 * 92.70192 * 4 2 1 8 8 C 1.37098 * 124.34542 * 196.99713 * 7 4 2 9 9 H 1.08006 * 120.00335 * 148.72972 * 8 7 4 10 10 C 1.38949 * 120.00157 * 328.72513 * 8 7 4 11 11 N 1.31411 * 119.99893 * 349.35388 * 10 8 7 12 12 Si 1.86803 * 120.00161 * 169.35398 * 10 8 7 13 13 H 1.48502 * 109.47261 * 90.00047 * 12 10 8 14 14 H 1.48498 * 109.47165 * 209.99900 * 12 10 8 15 15 H 1.48497 * 109.47133 * 329.99849 * 12 10 8 16 16 C 1.34417 * 111.30462 * 17.01365 * 7 4 2 17 17 O 1.21289 * 124.94125 * 179.63069 * 16 7 4 18 18 C 1.51281 * 110.11601 * 359.59358 * 16 7 4 19 19 H 1.08999 * 110.48497 * 102.55315 * 18 16 7 20 20 C 1.52995 * 110.48654 * 225.06992 * 18 16 7 21 21 H 1.08998 * 109.47821 * 182.35870 * 1 2 3 22 22 H 1.09001 * 109.46991 * 302.35681 * 1 2 3 23 23 H 1.09004 * 109.47669 * 62.35204 * 1 2 3 24 24 H 1.08998 * 109.47184 * 177.54557 * 6 4 2 25 25 H 1.09005 * 109.47339 * 297.54860 * 6 4 2 26 26 H 1.09000 * 109.46965 * 57.54600 * 6 4 2 27 27 H 0.97008 * 120.00048 * 180.02562 * 11 10 8 28 28 H 1.08997 * 109.47433 * 58.54578 * 20 18 16 29 29 H 1.08998 * 109.47475 * 298.54445 * 20 18 16 30 30 H 1.09006 * 109.46994 * 178.54436 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0828 -0.8028 1.1985 5 1 3.0303 -0.3790 1.5314 6 6 1.0723 -0.8060 2.3472 7 7 2.2852 -2.1668 0.6961 8 6 2.4439 -3.2697 1.4949 9 1 2.0964 -4.2351 1.1579 10 6 3.0519 -3.1454 2.7381 11 7 3.6600 -2.0267 3.0633 12 14 3.0051 -4.5685 3.9473 13 1 4.1883 -5.4399 3.7323 14 1 3.0252 -4.0400 5.3349 15 1 1.7647 -5.3571 3.7358 16 6 2.2953 -2.1958 -0.6477 17 8 2.4512 -3.1934 -1.3198 18 6 2.0832 -0.8035 -1.1998 19 1 3.0279 -0.3806 -1.5415 20 6 1.0654 -0.8296 -2.3418 21 1 -0.3635 -1.0267 0.0423 22 1 -0.3633 0.5500 0.8681 23 1 -0.3634 0.4769 -0.9103 24 1 1.4570 -1.4116 3.1678 25 1 0.9122 0.2152 2.6932 26 1 0.1278 -1.2239 1.9991 27 1 4.0848 -1.9400 3.9311 28 1 0.1219 -1.2368 -1.9785 29 1 1.4432 -1.4545 -3.1510 30 1 0.9060 0.1841 -2.7097 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220553843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = -59.399734 kcal Electronic energy + Delta-G solvation = -13409.200462 eV Core-core repulsion = 11203.442206 eV Total energy + Delta-G solvation = -2205.758256 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.45473 -37.54613 -35.98853 -33.29768 -32.09497 -28.77802 -28.18032 -25.69068 -23.95679 -21.13578 -20.20398 -18.68148 -17.47518 -16.94906 -16.06193 -15.69774 -15.33370 -14.82537 -14.63328 -13.81456 -13.53154 -13.45976 -13.23411 -12.88548 -12.72785 -12.54415 -12.33506 -12.18648 -12.08678 -11.80306 -11.50600 -11.22575 -10.88714 -10.17358 -9.54198 -8.32901 -6.04589 1.35005 1.38574 1.50256 2.03304 2.27024 3.05755 3.23795 3.68511 3.75848 4.02538 4.33194 4.54671 4.63863 4.66065 4.78036 4.90762 4.93109 5.02102 5.13872 5.21112 5.23308 5.30183 5.38058 5.48072 5.64769 5.75754 6.06248 6.54734 7.16380 7.36592 8.13084 8.70574 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.046646 B = 0.014099 C = 0.012051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.117968 B = 1985.511408 C = 2322.965024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 H 0.116 0.884 4 C 0.140 3.860 5 H 0.064 0.936 6 C -0.130 4.130 7 N -0.450 5.450 8 C -0.343 4.343 9 H 0.062 0.938 10 C 0.012 3.988 11 N -0.886 5.886 12 Si 0.979 3.021 13 H -0.278 1.278 14 H -0.264 1.264 15 H -0.270 1.270 16 C 0.432 3.568 17 O -0.639 6.639 18 C -0.114 4.114 19 H 0.099 0.901 20 C -0.122 4.122 21 H 0.029 0.971 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.046 0.954 27 H 0.274 0.726 28 H 0.053 0.947 29 H 0.042 0.958 30 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 8.263 -0.971 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.112 4.112 3 H 0.134 0.866 4 C 0.037 3.963 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.167 5.167 8 C -0.471 4.471 9 H 0.080 0.920 10 C -0.191 4.191 11 N -0.523 5.523 12 Si 0.803 3.197 13 H -0.204 1.204 14 H -0.188 1.188 15 H -0.194 1.194 16 C 0.222 3.778 17 O -0.528 6.528 18 C -0.135 4.135 19 H 0.118 0.882 20 C -0.180 4.180 21 H 0.049 0.951 22 H 0.093 0.907 23 H 0.102 0.898 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.437 7.826 -1.018 9.583 hybrid contribution 0.497 -1.158 0.686 1.435 sum -4.940 6.667 -0.332 8.304 Atomic orbital electron populations 1.21832 0.92997 1.00839 1.03279 1.22393 0.97588 0.99437 0.91768 0.86564 1.21639 0.98641 0.81892 0.94177 0.91787 1.21847 0.97435 1.01300 0.98190 1.44161 1.60227 1.07728 1.04588 1.19319 1.39617 0.88567 0.99622 0.91980 1.25990 0.93694 1.00053 0.99400 1.69968 1.32637 1.26945 1.22731 0.85156 0.78682 0.78163 0.77724 1.20376 1.18847 1.19432 1.21564 0.81196 0.91582 0.83487 1.90439 1.58425 1.39822 1.64099 1.21887 1.01592 0.92508 0.97521 0.88250 1.21616 0.97444 1.03039 0.95858 0.95140 0.90735 0.89835 0.93604 0.90796 0.93526 0.91653 0.92782 0.93865 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 6.62 71.98 0.48 -3.19 16 2 C -0.09 -3.05 3.55 -9.73 -0.03 -3.08 16 3 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 4 C 0.14 6.08 2.70 45.44 0.12 6.21 16 5 H 0.06 3.06 7.15 -2.38 -0.02 3.05 16 6 C -0.13 -5.20 7.68 71.98 0.55 -4.65 16 7 N -0.45 -24.07 2.87 -609.73 -1.75 -25.82 16 8 C -0.34 -19.99 9.12 84.04 0.77 -19.22 16 9 H 0.06 3.86 7.85 -2.91 -0.02 3.83 16 10 C 0.01 0.62 4.09 84.93 0.35 0.97 16 11 N -0.89 -46.98 10.39 21.66 0.23 -46.75 16 12 Si 0.98 42.67 29.57 68.60 2.03 44.70 16 13 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 14 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 C 0.43 22.82 7.40 87.90 0.65 23.47 16 17 O -0.64 -39.13 17.53 -3.06 -0.05 -39.18 16 18 C -0.11 -4.29 3.44 -10.80 -0.04 -4.33 16 19 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 20 C -0.12 -3.79 7.98 71.98 0.57 -3.21 16 21 H 0.03 1.00 7.12 -2.39 -0.02 0.99 16 22 H 0.07 1.79 7.20 -2.39 -0.02 1.77 16 23 H 0.08 1.81 6.91 -2.38 -0.02 1.80 16 24 H 0.04 2.10 5.58 -2.39 -0.01 2.09 16 25 H 0.07 2.40 8.00 -2.38 -0.02 2.38 16 26 H 0.05 1.80 6.45 -2.39 -0.02 1.79 16 27 H 0.27 13.58 8.31 -92.70 -0.77 12.81 16 28 H 0.05 1.71 6.47 -2.39 -0.02 1.69 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 2.15 7.99 -2.38 -0.02 2.13 16 Total: -1.00 -69.22 237.68 4.99 -64.23 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 1.12 Total: 9.87 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 3.42 Total: -7.04 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.52 Total: -72.58 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.05 Total: -39.18 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -69.22 4.99 -64.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220553843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.833 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds