Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.21508 * 2 1 4 4 C 1.54482 * 110.24903 * 237.98003 * 2 1 3 5 5 H 1.09005 * 110.96645 * 333.70063 * 4 2 1 6 6 C 1.52995 * 110.97052 * 97.42625 * 4 2 1 7 7 C 1.54630 * 101.76261 * 215.58450 * 4 2 1 8 8 H 1.09000 * 110.48720 * 266.11277 * 7 4 2 9 9 C 1.53002 * 110.48498 * 143.47256 * 7 4 2 10 10 C 1.51282 * 104.26056 * 24.57909 * 7 4 2 11 11 O 1.21287 * 124.94794 * 164.00725 * 10 7 4 12 12 N 1.34425 * 110.11076 * 344.14182 * 10 7 4 13 13 C 1.37106 * 124.34633 * 179.43532 * 12 10 7 14 14 H 1.07997 * 119.99669 * 145.96328 * 13 12 10 15 15 C 1.38940 * 120.00267 * 325.96323 * 13 12 10 16 16 N 1.31413 * 120.00153 * 339.84397 * 15 13 12 17 17 Si 1.86806 * 120.00090 * 159.56702 * 15 13 12 18 18 H 1.48495 * 109.47048 * 265.39211 * 17 15 13 19 19 H 1.48500 * 109.46664 * 25.39069 * 17 15 13 20 20 H 1.48498 * 109.46959 * 145.38813 * 17 15 13 21 21 H 1.08996 * 109.47184 * 299.52405 * 1 2 3 22 22 H 1.09000 * 109.46565 * 59.52581 * 1 2 3 23 23 H 1.08998 * 109.46710 * 179.52495 * 1 2 3 24 24 H 1.08997 * 109.47229 * 60.00444 * 6 4 2 25 25 H 1.09004 * 109.46473 * 180.02562 * 6 4 2 26 26 H 1.09000 * 109.47267 * 299.99565 * 6 4 2 27 27 H 1.08998 * 109.47052 * 59.99856 * 9 7 4 28 28 H 1.08996 * 109.47431 * 179.97438 * 9 7 4 29 29 H 1.09002 * 109.47204 * 299.99917 * 9 7 4 30 30 H 0.97001 * 120.00268 * 179.72633 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0647 -0.7685 -1.2289 5 1 1.3436 -1.5123 -1.5678 6 6 2.4274 0.1942 -2.3613 7 6 3.3288 -1.4462 -0.6513 8 1 4.2096 -0.8311 -0.8357 9 6 3.5119 -2.8404 -1.2545 10 6 3.0561 -1.5394 0.8339 11 8 3.6657 -2.2453 1.6092 12 7 2.0379 -0.7282 1.1686 13 6 1.5414 -0.5940 2.4396 14 1 1.1659 0.3616 2.7745 15 6 1.5214 -1.6874 3.2966 16 7 1.5922 -2.9057 2.8093 17 14 1.4018 -1.4253 5.1424 18 1 2.7647 -1.4265 5.7318 19 1 0.7453 -0.1216 5.4156 20 1 0.6001 -2.5195 5.7467 21 1 -0.3633 0.5064 0.8942 22 1 -0.3632 0.5212 -0.8857 23 1 -0.3633 -1.0276 -0.0085 24 1 3.1978 0.8848 -2.0184 25 1 2.8007 -0.3727 -3.2143 26 1 1.5418 0.7559 -2.6584 27 1 3.6175 -2.7572 -2.3361 28 1 4.4066 -3.3023 -0.8370 29 1 2.6424 -3.4546 -1.0204 30 1 1.5822 -3.6690 3.4078 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220553908.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = -39.015473 kcal Electronic energy + Delta-G solvation = -13317.068935 eV Core-core repulsion = 11112.194607 eV Total energy + Delta-G solvation = -2204.874328 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.35777 -35.24287 -33.73518 -31.42650 -30.21737 -28.28834 -25.92129 -23.02254 -22.16119 -19.73817 -19.00668 -16.36117 -15.61288 -14.75226 -14.06272 -13.56748 -13.28792 -13.08009 -13.05975 -12.13148 -12.00296 -11.68247 -11.49138 -11.21695 -11.11033 -10.91794 -10.71511 -10.70253 -10.41144 -10.10992 -10.08960 -9.63369 -8.75658 -7.87337 -7.11059 -6.04111 -3.71490 3.33697 3.40636 3.42688 4.28297 4.48640 5.13272 5.19195 5.28333 5.32254 5.46429 5.84757 5.91310 5.97012 6.05119 6.10548 6.16551 6.25158 6.31015 6.47435 6.58627 6.64276 6.69110 6.85594 6.94708 7.08882 7.63212 8.23144 9.06006 9.31134 9.68435 10.49477 11.03710 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045123 B = 0.014201 C = 0.011845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.377261 B = 1971.234479 C = 2363.338085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.123 3.877 3 H 0.056 0.944 4 C -0.099 4.099 5 H 0.081 0.919 6 C -0.136 4.136 7 C -0.123 4.123 8 H 0.083 0.917 9 C -0.123 4.123 10 C 0.475 3.525 11 O -0.533 6.533 12 N -0.453 5.453 13 C -0.337 4.337 14 H 0.081 0.919 15 C 0.055 3.945 16 N -0.821 5.821 17 Si 0.911 3.089 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.287 1.287 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.868 4.599 -8.399 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.019 3.981 3 H 0.073 0.927 4 C -0.118 4.118 5 H 0.099 0.901 6 C -0.194 4.194 7 C -0.145 4.145 8 H 0.101 0.899 9 C -0.181 4.181 10 C 0.261 3.739 11 O -0.411 6.411 12 N -0.175 5.175 13 C -0.464 4.464 14 H 0.099 0.901 15 C -0.155 4.155 16 N -0.455 5.455 17 Si 0.738 3.262 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.213 1.213 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.599 4.047 -7.870 8.870 hybrid contribution -0.164 0.055 0.856 0.873 sum -0.764 4.102 -7.014 8.162 Atomic orbital electron populations 1.21872 0.95386 1.02071 1.00482 1.21624 0.94354 0.95279 0.86883 0.92659 1.22273 0.97174 0.97612 0.94715 0.90089 1.21741 1.01072 0.98843 0.97731 1.21955 0.97750 0.97640 0.97169 0.89906 1.21489 1.02383 0.95746 0.98447 1.19945 0.81906 0.83773 0.88266 1.90507 1.52617 1.41597 1.56399 1.43697 1.28427 1.39657 1.05677 1.18918 1.44795 0.95643 0.87057 0.90131 1.25181 0.96215 0.94528 0.99610 1.69933 1.42321 0.97856 1.35389 0.86210 0.78048 0.77642 0.84289 1.20549 1.19805 1.21306 0.92123 0.93649 0.92456 0.92711 0.92799 0.92732 0.93516 0.92492 0.92594 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 8.91 37.16 0.33 -2.27 16 2 C 0.12 2.50 3.43 -67.01 -0.23 2.27 16 3 H 0.06 1.05 7.89 -51.93 -0.41 0.65 16 4 C -0.10 -1.73 2.78 -88.99 -0.25 -1.98 16 5 H 0.08 1.43 7.68 -51.93 -0.40 1.03 16 6 C -0.14 -1.81 9.14 37.16 0.34 -1.47 16 7 C -0.12 -2.50 3.08 -90.63 -0.28 -2.78 16 8 H 0.08 1.55 7.84 -51.93 -0.41 1.15 16 9 C -0.12 -2.29 9.09 37.16 0.34 -1.95 16 10 C 0.47 12.79 6.75 -10.86 -0.07 12.72 16 11 O -0.53 -16.70 15.13 5.55 0.08 -16.61 16 12 N -0.45 -11.84 2.86 -106.59 -0.30 -12.15 16 13 C -0.34 -9.52 8.83 -14.93 -0.13 -9.65 16 14 H 0.08 2.17 7.91 -52.49 -0.42 1.75 16 15 C 0.05 1.59 4.74 -17.47 -0.08 1.51 16 16 N -0.82 -25.25 11.28 55.50 0.63 -24.63 16 17 Si 0.91 22.28 29.60 -169.99 -5.03 17.25 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H 0.06 1.17 7.74 -51.93 -0.40 0.77 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.16 8.13 -51.93 -0.42 0.73 16 24 H 0.05 0.71 8.06 -51.93 -0.42 0.29 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 249.35 15.07 3.76 3.76 Total: -1.00 -33.46 249.35 -5.45 -38.91 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -4.54 Total: -2.92 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.04 Total: -3.61 kcal Atomic # 7 Polarization: -37.10 SS G_CDS: 0.32 Total: -36.77 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.08 Total: -16.61 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.46 -5.45 -38.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220553908.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.102 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds