Wall clock time and date at job start Mon Mar 30 2020 02:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.21508 * 2 1 4 4 C 1.54482 * 110.24903 * 237.98003 * 2 1 3 5 5 H 1.09005 * 110.96645 * 333.70063 * 4 2 1 6 6 C 1.52995 * 110.97052 * 97.42625 * 4 2 1 7 7 C 1.54630 * 101.76261 * 215.58450 * 4 2 1 8 8 H 1.09000 * 110.48720 * 266.11277 * 7 4 2 9 9 C 1.53002 * 110.48498 * 143.47256 * 7 4 2 10 10 C 1.51282 * 104.26056 * 24.57909 * 7 4 2 11 11 O 1.21287 * 124.94794 * 164.00725 * 10 7 4 12 12 N 1.34425 * 110.11076 * 344.14182 * 10 7 4 13 13 C 1.37106 * 124.34633 * 179.43532 * 12 10 7 14 14 H 1.07997 * 119.99669 * 145.96328 * 13 12 10 15 15 C 1.38940 * 120.00267 * 325.96323 * 13 12 10 16 16 N 1.31413 * 120.00153 * 339.84397 * 15 13 12 17 17 Si 1.86806 * 120.00090 * 159.56702 * 15 13 12 18 18 H 1.48495 * 109.47048 * 265.39211 * 17 15 13 19 19 H 1.48500 * 109.46664 * 25.39069 * 17 15 13 20 20 H 1.48498 * 109.46959 * 145.38813 * 17 15 13 21 21 H 1.08996 * 109.47184 * 299.52405 * 1 2 3 22 22 H 1.09000 * 109.46565 * 59.52581 * 1 2 3 23 23 H 1.08998 * 109.46710 * 179.52495 * 1 2 3 24 24 H 1.08997 * 109.47229 * 60.00444 * 6 4 2 25 25 H 1.09004 * 109.46473 * 180.02562 * 6 4 2 26 26 H 1.09000 * 109.47267 * 299.99565 * 6 4 2 27 27 H 1.08998 * 109.47052 * 59.99856 * 9 7 4 28 28 H 1.08996 * 109.47431 * 179.97438 * 9 7 4 29 29 H 1.09002 * 109.47204 * 299.99917 * 9 7 4 30 30 H 0.97001 * 120.00268 * 179.72633 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9067 1.0229 0.0000 4 6 2.0647 -0.7685 -1.2289 5 1 1.3436 -1.5123 -1.5678 6 6 2.4274 0.1942 -2.3613 7 6 3.3288 -1.4462 -0.6513 8 1 4.2096 -0.8311 -0.8357 9 6 3.5119 -2.8404 -1.2545 10 6 3.0561 -1.5394 0.8339 11 8 3.6657 -2.2453 1.6092 12 7 2.0379 -0.7282 1.1686 13 6 1.5414 -0.5940 2.4396 14 1 1.1659 0.3616 2.7745 15 6 1.5214 -1.6874 3.2966 16 7 1.5922 -2.9057 2.8093 17 14 1.4018 -1.4253 5.1424 18 1 2.7647 -1.4265 5.7318 19 1 0.7453 -0.1216 5.4156 20 1 0.6001 -2.5195 5.7467 21 1 -0.3633 0.5064 0.8942 22 1 -0.3632 0.5212 -0.8857 23 1 -0.3633 -1.0276 -0.0085 24 1 3.1978 0.8848 -2.0184 25 1 2.8007 -0.3727 -3.2143 26 1 1.5418 0.7559 -2.6584 27 1 3.6175 -2.7572 -2.3361 28 1 4.4066 -3.3023 -0.8370 29 1 2.6424 -3.4546 -1.0204 30 1 1.5822 -3.6690 3.4078 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220553908.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:32 Heat of formation + Delta-G solvation = -61.505670 kcal Electronic energy + Delta-G solvation = -13318.044183 eV Core-core repulsion = 11112.194607 eV Total energy + Delta-G solvation = -2205.849576 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.14740 -37.18337 -35.63202 -33.37055 -31.88423 -29.69957 -27.82901 -24.74554 -23.78213 -21.29104 -20.92820 -18.37775 -17.35019 -16.80783 -15.98487 -15.13606 -15.10875 -14.75802 -14.53879 -13.77161 -13.58938 -13.23166 -13.02845 -12.92022 -12.80449 -12.63864 -12.42759 -12.35123 -12.18194 -11.94341 -11.64098 -11.10849 -10.86278 -9.92016 -9.21059 -8.21665 -5.92113 1.35305 1.42530 1.49762 2.27190 2.47766 3.21698 3.36725 3.72471 3.76689 3.94960 4.41315 4.51442 4.55264 4.63522 4.68762 4.73977 4.92183 5.05422 5.10992 5.18898 5.24679 5.27251 5.38793 5.44363 5.49813 5.62671 6.10268 6.93647 7.26700 7.61322 8.43578 8.86707 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.045123 B = 0.014201 C = 0.011845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.377261 B = 1971.234479 C = 2363.338085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.111 3.889 3 H 0.074 0.926 4 C -0.085 4.085 5 H 0.080 0.920 6 C -0.128 4.128 7 C -0.117 4.117 8 H 0.103 0.897 9 C -0.116 4.116 10 C 0.447 3.553 11 O -0.594 6.594 12 N -0.471 5.471 13 C -0.351 4.351 14 H 0.088 0.912 15 C -0.002 4.002 16 N -0.864 5.864 17 Si 0.976 3.024 18 H -0.291 1.291 19 H -0.249 1.249 20 H -0.281 1.281 21 H 0.046 0.954 22 H 0.092 0.908 23 H 0.031 0.969 24 H 0.059 0.941 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 6.403 -10.271 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.092 0.908 4 C -0.104 4.104 5 H 0.098 0.902 6 C -0.185 4.185 7 C -0.138 4.138 8 H 0.121 0.879 9 C -0.174 4.174 10 C 0.235 3.765 11 O -0.477 6.477 12 N -0.192 5.192 13 C -0.478 4.478 14 H 0.106 0.894 15 C -0.208 4.208 16 N -0.499 5.499 17 Si 0.800 3.200 18 H -0.218 1.218 19 H -0.172 1.172 20 H -0.207 1.207 21 H 0.065 0.935 22 H 0.110 0.890 23 H 0.050 0.950 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.090 5.902 -9.774 11.470 hybrid contribution -0.020 -0.439 1.397 1.465 sum -1.110 5.463 -8.377 10.062 Atomic orbital electron populations 1.21807 0.94123 1.00926 1.02078 1.22024 0.95515 0.95801 0.85896 0.90825 1.22278 0.95232 0.97961 0.94884 0.90197 1.21717 1.02366 0.98154 0.96298 1.21970 1.00050 0.99367 0.92450 0.87867 1.21459 1.00534 0.94175 1.01232 1.21177 0.81386 0.82859 0.91042 1.90445 1.54576 1.43853 1.58855 1.44105 1.28516 1.39746 1.06835 1.19305 1.43959 0.95777 0.88788 0.89410 1.26147 0.96107 0.94288 1.04253 1.70071 1.44601 0.98632 1.36620 0.85203 0.77424 0.78745 0.78592 1.21805 1.17227 1.20696 0.93504 0.88973 0.94959 0.92192 0.90569 0.90517 0.88679 0.93995 0.95024 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.91 71.98 0.64 -3.98 16 2 C 0.11 4.28 3.43 45.45 0.16 4.44 16 3 H 0.07 2.58 7.89 -2.38 -0.02 2.56 16 4 C -0.08 -2.71 2.78 -9.74 -0.03 -2.74 16 5 H 0.08 2.59 7.68 -2.38 -0.02 2.57 16 6 C -0.13 -2.72 9.14 71.98 0.66 -2.06 16 7 C -0.12 -4.57 3.08 -10.80 -0.03 -4.60 16 8 H 0.10 3.61 7.84 -2.39 -0.02 3.59 16 9 C -0.12 -4.18 9.09 71.98 0.65 -3.52 16 10 C 0.45 24.50 6.75 87.90 0.59 25.09 16 11 O -0.59 -38.82 15.13 -3.05 -0.05 -38.86 16 12 N -0.47 -24.79 2.86 -609.72 -1.74 -26.53 16 13 C -0.35 -20.06 8.83 84.04 0.74 -19.32 16 14 H 0.09 4.73 7.91 -2.91 -0.02 4.71 16 15 C 0.00 -0.14 4.74 84.92 0.40 0.26 16 16 N -0.86 -55.25 11.28 21.66 0.24 -55.00 16 17 Si 0.98 46.74 29.60 68.60 2.03 48.77 16 18 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 19 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 20 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 21 H 0.05 1.74 7.74 -2.39 -0.02 1.72 16 22 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 23 H 0.03 1.27 8.13 -2.39 -0.02 1.25 16 24 H 0.06 1.24 8.06 -2.39 -0.02 1.23 16 25 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -76.57 249.35 5.37 -71.20 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: 1.10 Total: 6.86 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 3.79 Total: -6.43 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.50 Total: -81.54 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -0.05 Total: -38.86 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Total: -76.57 5.37 -71.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220553908.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.690 kcal (2) G-P(sol) polarization free energy of solvation -76.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds