Wall clock time and date at job start Mon Mar 30 2020 01:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46861 * 2 1 4 4 C 1.53006 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.55826 * 29.31005 * 4 3 2 6 6 C 1.52999 * 117.49917 * 243.62607 * 4 3 2 7 7 C 1.52994 * 117.49819 * 175.00122 * 4 3 2 8 8 H 1.09003 * 117.51915 * 214.97136 * 7 4 3 9 9 N 1.46499 * 117.50295 * 0.02562 * 7 4 3 10 10 C 1.34777 * 120.00195 * 205.01736 * 9 7 4 11 11 O 1.21683 * 120.00011 * 359.97438 * 10 9 7 12 12 C 1.46373 * 120.00143 * 179.97438 * 10 9 7 13 13 H 1.08001 * 119.99611 * 0.02562 * 12 10 9 14 14 C 1.40045 * 120.00438 * 179.97438 * 12 10 9 15 15 N 1.30674 * 119.99799 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00532 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47326 * 270.00729 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00479 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00190 * 16 14 12 20 20 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47418 * 300.00288 * 1 2 3 22 22 H 1.09009 * 109.46607 * 60.00177 * 1 2 3 23 23 H 1.08992 * 109.47385 * 240.00251 * 2 1 3 24 24 H 1.08995 * 109.46601 * 119.99855 * 2 1 3 25 25 H 1.09002 * 109.47435 * 60.00012 * 3 2 1 26 26 H 1.08995 * 109.47394 * 299.99369 * 3 2 1 27 27 H 1.08996 * 117.50179 * 145.02235 * 6 4 3 28 28 H 1.08997 * 117.49809 * 359.97438 * 6 4 3 29 29 H 0.97000 * 119.99478 * 25.01014 * 9 7 4 30 30 H 0.96996 * 120.00331 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5850 -0.4804 6 6 4.2760 2.0456 1.2167 7 6 4.2765 2.7945 -0.1175 8 1 5.2119 2.8268 -0.6761 9 7 3.4362 3.9900 -0.2220 10 6 3.9161 5.1013 -0.8146 11 8 5.0475 5.1118 -1.2624 12 6 3.0764 6.2956 -0.9196 13 1 2.0724 6.2864 -0.5217 14 6 3.5752 7.4506 -1.5348 15 7 4.7901 7.4619 -2.0157 16 14 2.5033 8.9745 -1.6694 17 1 1.7357 8.9292 -2.9397 18 1 1.5606 9.0193 -0.5228 19 1 3.3614 10.1863 -1.6524 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.8934 -0.5137 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 5.2109 1.5850 1.5357 28 1 3.6504 2.4427 2.0161 29 1 2.5344 3.9817 0.1352 30 1 5.1356 8.2616 -2.4422 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228998606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:44 Heat of formation + Delta-G solvation = -38.765567 kcal Electronic energy + Delta-G solvation = -12224.960321 eV Core-core repulsion = 10020.096830 eV Total energy + Delta-G solvation = -2204.863491 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.31641 -36.27508 -33.83217 -32.48966 -30.99550 -27.16816 -26.17362 -21.84667 -21.46497 -20.46849 -18.90389 -17.26175 -15.55915 -15.14839 -14.84953 -14.43032 -13.57935 -13.35430 -12.77912 -12.51803 -12.21495 -12.08825 -11.61668 -11.18415 -11.12783 -10.99223 -10.75218 -10.67881 -10.47530 -10.23359 -10.01006 -9.40851 -8.84375 -7.63400 -7.31731 -6.19561 -4.65286 3.14141 3.20848 3.24389 4.09528 4.28288 4.64953 4.72938 4.92429 5.13926 5.23305 5.47637 5.53916 5.63518 5.72937 5.89069 5.94335 5.97918 6.10374 6.14460 6.20627 6.38992 6.44164 6.63786 6.65992 7.42640 7.91216 8.11031 8.33176 9.01375 9.52198 10.59180 10.77314 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044634 B = 0.007931 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.171057 B = 3529.674966 C = 3993.554164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.178 4.178 5 H 0.099 0.901 6 C -0.208 4.208 7 C 0.117 3.883 8 H 0.125 0.875 9 N -0.734 5.734 10 C 0.556 3.444 11 O -0.580 6.580 12 C -0.545 4.545 13 H 0.068 0.932 14 C 0.087 3.913 15 N -0.767 5.767 16 Si 0.909 3.091 17 H -0.272 1.272 18 H -0.265 1.265 19 H -0.279 1.279 20 H 0.049 0.951 21 H 0.052 0.948 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.382 0.618 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 -9.651 4.048 12.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.124 4.124 4 C -0.198 4.198 5 H 0.117 0.883 6 C -0.247 4.247 7 C 0.008 3.992 8 H 0.143 0.857 9 N -0.385 5.385 10 C 0.360 3.640 11 O -0.462 6.462 12 C -0.582 4.582 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.396 5.396 16 Si 0.733 3.267 17 H -0.197 1.197 18 H -0.189 1.189 19 H -0.204 1.204 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.214 0.786 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.691 -9.485 3.599 11.632 hybrid contribution -0.944 0.626 0.218 1.153 sum -6.635 -8.859 3.818 11.708 Atomic orbital electron populations 1.21789 0.96249 1.01115 1.01889 1.21494 0.95350 0.97193 1.01637 1.21087 0.92982 0.96308 1.02068 1.22803 0.94912 0.98792 1.03326 0.88264 1.23519 1.02127 1.06098 0.92970 1.21314 0.96925 0.83661 0.97305 0.85726 1.45640 1.16174 1.11813 1.64911 1.18255 0.87142 0.81601 0.77002 1.90588 1.20533 1.83346 1.51766 1.20871 1.00592 0.96018 1.40684 0.91401 1.25708 0.94742 0.99491 0.93296 1.70020 1.14574 1.27911 1.27082 0.86358 0.80280 0.80766 0.79270 1.19714 1.18909 1.20418 0.93172 0.92846 0.92687 0.92255 0.92292 0.92165 0.91377 0.89372 0.89349 0.78644 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 37.16 0.37 -1.20 16 2 C -0.12 -1.37 5.89 -26.73 -0.16 -1.53 16 3 C -0.09 -1.21 4.41 -26.73 -0.12 -1.33 16 4 C -0.18 -2.77 5.74 -90.62 -0.52 -3.29 16 5 H 0.10 1.41 8.07 -51.93 -0.42 0.99 16 6 C -0.21 -3.35 10.10 -26.73 -0.27 -3.62 16 7 C 0.12 2.34 6.41 -67.93 -0.44 1.90 16 8 H 0.13 2.77 7.40 -51.93 -0.38 2.39 16 9 N -0.73 -16.86 5.34 -55.22 -0.29 -17.15 16 10 C 0.56 16.07 7.75 -12.99 -0.10 15.97 16 11 O -0.58 -19.02 14.59 5.20 0.08 -18.94 16 12 C -0.54 -15.54 9.54 -35.63 -0.34 -15.88 16 13 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 14 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 15 N -0.77 -23.19 11.83 55.55 0.66 -22.53 16 16 Si 0.91 20.22 29.56 -169.99 -5.02 15.19 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.83 7.79 -51.93 -0.40 0.42 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 28 H 0.09 1.39 8.03 -51.93 -0.42 0.97 16 29 H 0.38 7.79 7.81 -40.82 -0.32 7.47 16 30 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 260.11 15.07 3.92 3.92 Total: -1.00 -32.95 260.11 -6.78 -39.74 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.45 Total: 6.39 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.67 Total: -6.61 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.36 Total: -39.68 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.08 Total: -18.94 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.95 -6.78 -39.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228998606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.972 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds