Wall clock time and date at job start Mon Mar 30 2020 01:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46861 * 2 1 4 4 C 1.53006 * 109.46985 * 179.97438 * 3 2 1 5 5 H 1.08999 * 115.55826 * 29.31005 * 4 3 2 6 6 C 1.52999 * 117.49917 * 243.62607 * 4 3 2 7 7 C 1.52994 * 117.49819 * 175.00122 * 4 3 2 8 8 H 1.09003 * 117.51915 * 214.97136 * 7 4 3 9 9 N 1.46499 * 117.50295 * 0.02562 * 7 4 3 10 10 C 1.34777 * 120.00195 * 205.01736 * 9 7 4 11 11 O 1.21683 * 120.00011 * 359.97438 * 10 9 7 12 12 C 1.46373 * 120.00143 * 179.97438 * 10 9 7 13 13 H 1.08001 * 119.99611 * 0.02562 * 12 10 9 14 14 C 1.40045 * 120.00438 * 179.97438 * 12 10 9 15 15 N 1.30674 * 119.99799 * 0.02562 * 14 12 10 16 16 Si 1.86798 * 120.00532 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47326 * 270.00729 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00479 * 16 14 12 19 19 H 1.48498 * 109.47210 * 150.00190 * 16 14 12 20 20 H 1.08997 * 109.47356 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47418 * 300.00288 * 1 2 3 22 22 H 1.09009 * 109.46607 * 60.00177 * 1 2 3 23 23 H 1.08992 * 109.47385 * 240.00251 * 2 1 3 24 24 H 1.08995 * 109.46601 * 119.99855 * 2 1 3 25 25 H 1.09002 * 109.47435 * 60.00012 * 3 2 1 26 26 H 1.08995 * 109.47394 * 299.99369 * 3 2 1 27 27 H 1.08996 * 117.50179 * 145.02235 * 6 4 3 28 28 H 1.08997 * 117.49809 * 359.97438 * 6 4 3 29 29 H 0.97000 * 119.99478 * 25.01014 * 9 7 4 30 30 H 0.96996 * 120.00331 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 4.0405 0.5850 -0.4804 6 6 4.2760 2.0456 1.2167 7 6 4.2765 2.7945 -0.1175 8 1 5.2119 2.8268 -0.6761 9 7 3.4362 3.9900 -0.2220 10 6 3.9161 5.1013 -0.8146 11 8 5.0475 5.1118 -1.2624 12 6 3.0764 6.2956 -0.9196 13 1 2.0724 6.2864 -0.5217 14 6 3.5752 7.4506 -1.5348 15 7 4.7901 7.4619 -2.0157 16 14 2.5033 8.9745 -1.6694 17 1 1.7357 8.9292 -2.9397 18 1 1.5606 9.0193 -0.5228 19 1 3.3614 10.1863 -1.6524 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 1.8934 -0.5137 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 5.2109 1.5850 1.5357 28 1 3.6504 2.4427 2.0161 29 1 2.5344 3.9817 0.1352 30 1 5.1356 8.2616 -2.4422 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228998606.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:44 Heat of formation + Delta-G solvation = -61.387838 kcal Electronic energy + Delta-G solvation = -12225.941296 eV Core-core repulsion = 10020.096830 eV Total energy + Delta-G solvation = -2205.844467 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.99694 -38.14916 -35.04819 -34.57273 -32.89018 -28.55711 -27.99200 -23.39883 -22.62699 -22.04125 -20.54473 -19.27551 -17.57466 -16.70893 -16.18891 -15.93603 -15.15957 -14.73820 -14.65318 -14.22088 -13.50445 -13.31877 -13.00172 -12.89810 -12.79433 -12.65175 -12.22966 -12.02899 -11.86701 -11.63289 -11.48208 -10.93192 -10.78551 -9.90118 -9.15858 -8.31025 -6.87924 1.39809 1.41551 1.57134 2.23889 2.40929 2.96628 3.03819 3.64273 3.72417 4.08811 4.13363 4.28396 4.37524 4.49492 4.66450 4.86963 4.93487 4.98541 5.03180 5.10122 5.21528 5.30015 5.39666 5.43051 5.53501 5.86101 6.20592 6.30965 6.84457 7.52496 8.47359 8.65612 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044634 B = 0.007931 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.171057 B = 3529.674966 C = 3993.554164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.087 4.087 4 C -0.146 4.146 5 H 0.117 0.883 6 C -0.182 4.182 7 C 0.062 3.938 8 H 0.091 0.909 9 N -0.722 5.722 10 C 0.538 3.462 11 O -0.633 6.633 12 C -0.574 4.574 13 H 0.088 0.912 14 C 0.028 3.972 15 N -0.822 5.822 16 Si 1.001 2.999 17 H -0.261 1.261 18 H -0.248 1.248 19 H -0.272 1.272 20 H 0.065 0.935 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.394 0.606 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.738 -10.194 5.058 14.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.125 4.125 4 C -0.165 4.165 5 H 0.135 0.865 6 C -0.221 4.221 7 C -0.045 4.045 8 H 0.109 0.891 9 N -0.373 5.373 10 C 0.342 3.658 11 O -0.520 6.520 12 C -0.610 4.610 13 H 0.106 0.894 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.819 3.181 17 H -0.185 1.185 18 H -0.172 1.172 19 H -0.197 1.197 20 H 0.084 0.916 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.229 0.771 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.783 -10.094 4.646 13.566 hybrid contribution -0.278 0.684 -0.069 0.742 sum -8.061 -9.409 4.577 13.209 Atomic orbital electron populations 1.21782 0.95288 1.02140 1.01781 1.21454 0.96180 0.95143 1.02375 1.21128 0.91577 0.98263 1.01537 1.22911 0.95971 0.95879 1.01772 0.86472 1.23572 1.03162 1.03635 0.91763 1.21377 0.96844 0.84945 1.01351 0.89141 1.45189 1.16833 1.11504 1.63792 1.18657 0.86696 0.83341 0.77075 1.90536 1.22644 1.84662 1.54205 1.21425 1.01542 0.96683 1.41356 0.89399 1.27012 0.96205 1.03542 0.91969 1.70192 1.17251 1.29548 1.28172 0.84983 0.77982 0.75047 0.80046 1.18521 1.17153 1.19684 0.91612 0.92565 0.93249 0.91936 0.91128 0.91725 0.92953 0.87482 0.88427 0.77145 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.11 -2.28 5.89 30.60 0.18 -2.10 16 3 C -0.09 -2.26 4.41 30.60 0.13 -2.12 16 4 C -0.15 -4.27 5.74 -10.79 -0.06 -4.33 16 5 H 0.12 3.05 8.07 -2.39 -0.02 3.03 16 6 C -0.18 -5.54 10.10 30.59 0.31 -5.23 16 7 C 0.06 2.53 6.41 44.99 0.29 2.82 16 8 H 0.09 4.28 7.40 -2.39 -0.02 4.26 16 9 N -0.72 -33.82 5.34 -446.83 -2.38 -36.20 16 10 C 0.54 32.23 7.75 86.36 0.67 32.90 16 11 O -0.63 -43.76 14.59 -4.29 -0.06 -43.82 16 12 C -0.57 -33.17 9.54 24.83 0.24 -32.93 16 13 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 14 C 0.03 1.57 5.50 85.30 0.47 2.04 16 15 N -0.82 -51.19 11.83 21.83 0.26 -50.94 16 16 Si 1.00 41.27 29.56 68.60 2.03 43.30 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 21 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.62 7.79 -2.39 -0.02 1.60 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.10 2.82 8.03 -2.39 -0.02 2.80 16 29 H 0.39 16.08 7.81 -92.71 -0.72 15.35 16 30 H 0.28 15.45 8.29 -92.71 -0.77 14.68 16 Total: -1.00 -74.31 260.11 3.17 -71.14 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.39 Total: 27.49 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 2.94 Total: -10.97 kcal Atomic # 7 Polarization: -85.01 SS G_CDS: -2.13 Total: -87.14 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.06 Total: -43.82 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -74.31 3.17 -71.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228998606.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.749 kcal (2) G-P(sol) polarization free energy of solvation -74.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds