Wall clock time and date at job start Mon Mar 30 2020 01:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47094 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.56434 * 330.68798 * 4 3 2 6 6 C 1.52998 * 117.49874 * 116.37760 * 4 3 2 7 7 C 1.52998 * 60.00051 * 107.49014 * 6 4 3 8 8 H 1.08996 * 117.50236 * 107.51322 * 7 6 4 9 9 N 1.46504 * 117.50092 * 252.51230 * 7 6 4 10 10 C 1.34774 * 120.00240 * 223.60723 * 9 7 6 11 11 O 1.21691 * 119.99707 * 0.02562 * 10 9 7 12 12 C 1.46374 * 119.99951 * 179.97438 * 10 9 7 13 13 H 1.07991 * 120.00335 * 0.02562 * 12 10 9 14 14 C 1.40055 * 119.99881 * 180.02562 * 12 10 9 15 15 N 1.30678 * 119.99845 * 359.97438 * 14 12 10 16 16 Si 1.86794 * 120.00205 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47341 * 180.02562 * 16 14 12 18 18 H 1.48510 * 109.46748 * 300.00101 * 16 14 12 19 19 H 1.48498 * 109.47206 * 59.99778 * 16 14 12 20 20 H 1.08998 * 109.47373 * 60.00106 * 1 2 3 21 21 H 1.08997 * 109.46640 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.46907 * 299.99755 * 1 2 3 23 23 H 1.09000 * 109.47319 * 239.99972 * 2 1 3 24 24 H 1.08998 * 109.47373 * 119.99894 * 2 1 3 25 25 H 1.09000 * 109.47060 * 59.99814 * 3 2 1 26 26 H 1.08998 * 109.46924 * 300.00169 * 3 2 1 27 27 H 1.09002 * 117.49693 * 0.02562 * 6 4 3 28 28 H 1.08998 * 117.51903 * 214.96999 * 6 4 3 29 29 H 0.97005 * 119.99919 * 43.60506 * 9 7 6 30 30 H 0.97001 * 119.99601 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 4.0402 0.5852 0.4824 6 6 4.2769 2.0453 -1.2150 7 6 4.2764 2.7945 0.1190 8 1 5.2113 2.8270 0.6784 9 7 3.4360 3.9900 0.2231 10 6 3.9155 5.1014 0.8158 11 8 5.0468 5.1120 1.2641 12 6 3.0760 6.2959 0.9193 13 1 2.0722 6.2867 0.5211 14 6 3.5746 7.4510 1.5347 15 7 4.7891 7.4621 2.0170 16 14 2.5031 8.9753 1.6675 17 1 3.2585 10.0531 2.3550 18 1 2.1195 9.4307 0.3070 19 1 1.2795 8.6541 2.4452 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 3.6520 2.4422 -2.0150 28 1 5.2122 1.5849 -1.5332 29 1 2.5343 3.9817 -0.1346 30 1 5.1345 8.2622 2.4429 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228998634.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:47 Heat of formation + Delta-G solvation = -61.367140 kcal Electronic energy + Delta-G solvation = -12225.807783 eV Core-core repulsion = 10019.964214 eV Total energy + Delta-G solvation = -2205.843569 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.99570 -38.14748 -35.04772 -34.57111 -32.88980 -28.55596 -27.99200 -23.39820 -22.62694 -22.04036 -20.54465 -19.27350 -17.57071 -16.70768 -16.19149 -15.93846 -15.16119 -14.73707 -14.64640 -14.21925 -13.50466 -13.32073 -12.99925 -12.90445 -12.76880 -12.64953 -12.22735 -12.06489 -11.86801 -11.63281 -11.48106 -10.91767 -10.78539 -9.90331 -9.15845 -8.30804 -6.87899 1.39759 1.43425 1.55488 2.24031 2.41025 2.96712 3.03764 3.64321 3.72405 4.08848 4.13322 4.28368 4.37499 4.49473 4.66415 4.86971 4.93478 4.98544 5.03186 5.10099 5.21502 5.29830 5.39652 5.43025 5.53479 5.86042 6.20529 6.30942 6.84381 7.52540 8.47403 8.65602 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044638 B = 0.007930 C = 0.007009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.113764 B = 3529.898197 C = 3993.648711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C -0.087 4.087 4 C -0.146 4.146 5 H 0.117 0.883 6 C -0.182 4.182 7 C 0.062 3.938 8 H 0.091 0.909 9 N -0.722 5.722 10 C 0.538 3.462 11 O -0.633 6.633 12 C -0.575 4.575 13 H 0.088 0.912 14 C 0.028 3.972 15 N -0.822 5.822 16 Si 1.000 3.000 17 H -0.273 1.273 18 H -0.254 1.254 19 H -0.254 1.254 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.097 0.903 28 H 0.107 0.893 29 H 0.394 0.606 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.732 -10.183 -5.056 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.125 4.125 4 C -0.165 4.165 5 H 0.135 0.865 6 C -0.221 4.221 7 C -0.045 4.045 8 H 0.109 0.891 9 N -0.373 5.373 10 C 0.342 3.658 11 O -0.521 6.521 12 C -0.611 4.611 13 H 0.106 0.894 14 C -0.187 4.187 15 N -0.451 5.451 16 Si 0.819 3.181 17 H -0.198 1.198 18 H -0.178 1.178 19 H -0.178 1.178 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.125 0.875 29 H 0.229 0.771 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.775 -10.083 -4.638 13.551 hybrid contribution -0.286 0.683 0.054 0.742 sum -8.060 -9.400 -4.584 13.204 Atomic orbital electron populations 1.21780 0.95289 1.02140 1.01781 1.21456 0.96179 0.95143 1.02376 1.21127 0.91577 0.98264 1.01536 1.22911 0.95964 0.95883 1.01775 0.86472 1.23572 1.03155 1.03630 0.91768 1.21376 0.96846 0.84942 1.01354 0.89144 1.45189 1.16851 1.11508 1.63772 1.18651 0.86687 0.83338 0.77081 1.90538 1.22642 1.84675 1.54208 1.21401 1.01595 0.96683 1.41417 0.89385 1.27014 0.96218 1.03542 0.91943 1.70190 1.17281 1.29538 1.28129 0.85038 0.78103 0.75133 0.79804 1.19792 1.17750 1.17759 0.92562 0.91612 0.93254 0.91125 0.91939 0.92965 0.91716 0.88426 0.87481 0.77146 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 9.91 71.98 0.71 -2.01 16 2 C -0.11 -2.28 5.89 30.59 0.18 -2.10 16 3 C -0.09 -2.26 4.41 30.59 0.13 -2.13 16 4 C -0.15 -4.27 5.74 -10.79 -0.06 -4.33 16 5 H 0.12 3.05 8.08 -2.39 -0.02 3.03 16 6 C -0.18 -5.54 10.10 30.59 0.31 -5.23 16 7 C 0.06 2.53 6.41 44.99 0.29 2.82 16 8 H 0.09 4.28 7.40 -2.39 -0.02 4.26 16 9 N -0.72 -33.82 5.34 -446.82 -2.39 -36.21 16 10 C 0.54 32.24 7.75 86.36 0.67 32.91 16 11 O -0.63 -43.78 14.59 -4.32 -0.06 -43.84 16 12 C -0.57 -33.23 9.54 24.83 0.24 -32.99 16 13 H 0.09 4.53 7.85 -2.92 -0.02 4.51 16 14 C 0.03 1.58 5.50 85.31 0.47 2.05 16 15 N -0.82 -51.19 11.83 21.84 0.26 -50.94 16 16 Si 1.00 41.25 29.56 68.60 2.03 43.28 16 17 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 18 H -0.25 -9.80 7.11 99.48 0.71 -9.10 16 19 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 20 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 21 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.62 7.79 -2.39 -0.02 1.60 16 27 H 0.10 2.82 8.03 -2.39 -0.02 2.80 16 28 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 29 H 0.39 16.08 7.81 -92.70 -0.72 15.35 16 30 H 0.28 15.50 8.29 -92.71 -0.77 14.73 16 Total: -1.00 -74.29 260.11 3.17 -71.12 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.39 Total: 27.59 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 2.94 Total: -11.00 kcal Atomic # 7 Polarization: -85.02 SS G_CDS: -2.13 Total: -87.15 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.06 Total: -43.84 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -74.29 3.17 -71.12 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228998634.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.750 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds