Wall clock time and date at job start Mon Mar 30 2020 02:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46722 * 2 1 4 4 H 1.08996 * 109.67196 * 304.49660 * 3 2 1 5 5 C 1.53398 * 109.67255 * 183.96300 * 3 2 1 6 6 N 1.46853 * 108.77715 * 190.84016 * 5 3 2 7 7 C 1.36942 * 120.38578 * 237.60153 * 6 5 3 8 8 H 1.08005 * 119.99636 * 29.09540 * 7 6 5 9 9 C 1.38810 * 120.00397 * 209.09811 * 7 6 5 10 10 N 1.31620 * 119.99933 * 17.95018 * 9 7 6 11 11 Si 1.86801 * 120.00273 * 197.95037 * 9 7 6 12 12 H 1.48495 * 109.46806 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47188 * 119.99929 * 11 9 7 14 14 H 1.48498 * 109.47216 * 239.99903 * 11 9 7 15 15 C 1.46862 * 119.23650 * 57.62297 * 6 5 3 16 16 C 1.53396 * 108.77496 * 302.37657 * 15 6 5 17 17 C 1.51296 * 109.67522 * 64.99944 * 3 2 1 18 18 O 1.20754 * 120.80509 * 352.71462 * 17 3 2 19 19 H 1.08995 * 109.47508 * 299.99989 * 1 2 3 20 20 H 1.09003 * 109.47181 * 60.00394 * 1 2 3 21 21 H 1.09002 * 109.46726 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47508 * 240.00011 * 2 1 3 23 23 H 1.09003 * 109.47181 * 119.99606 * 2 1 3 24 24 H 1.09000 * 109.58745 * 310.62938 * 5 3 2 25 25 H 1.09001 * 109.58508 * 71.05432 * 5 3 2 26 26 H 0.96999 * 119.99916 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.58729 * 182.59215 * 15 6 5 28 28 H 1.08995 * 109.58708 * 62.16607 * 15 6 5 29 29 H 1.08996 * 109.67855 * 289.69917 * 16 15 6 30 30 H 1.09000 * 109.67219 * 169.15667 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6141 1.9822 -0.8459 5 6 3.5706 1.4492 -0.0998 6 7 4.0555 2.8104 0.1620 7 6 4.8159 3.4660 -0.7692 8 1 4.6916 3.2463 -1.8194 9 6 5.7464 4.4128 -0.3637 10 7 6.1569 4.4386 0.8866 11 14 6.4160 5.6504 -1.5922 12 1 5.8000 5.4108 -2.9219 13 1 6.0913 7.0259 -1.1363 14 1 7.8896 5.4981 -1.6952 15 6 3.7159 3.4604 1.4344 16 6 2.1890 3.5056 1.5737 17 6 1.6420 2.1235 1.2911 18 8 0.9061 1.5770 2.0772 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.9879 0.7643 0.6383 25 1 3.8729 1.1398 -1.1004 26 1 6.8068 5.1005 1.1701 27 1 4.1138 4.4752 1.4440 28 1 4.1416 2.8911 2.2606 29 1 1.7760 4.2168 0.8585 30 1 1.9216 3.8059 2.5869 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229756299.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:32 Heat of formation + Delta-G solvation = -30.303502 kcal Electronic energy + Delta-G solvation = -12980.703591 eV Core-core repulsion = 10776.207042 eV Total energy + Delta-G solvation = -2204.496549 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.40971 -36.09189 -33.98265 -31.84764 -29.94896 -28.40273 -24.67536 -23.17664 -21.87569 -20.63009 -18.45731 -16.70879 -15.65175 -15.02864 -14.64624 -13.90284 -13.81054 -13.46007 -13.21165 -12.84735 -12.42945 -11.84954 -11.36275 -11.25106 -11.08848 -10.93579 -10.75017 -10.54172 -10.40430 -10.35411 -9.98393 -9.75714 -8.71603 -8.44306 -6.83619 -5.91271 -3.36075 2.60047 3.31711 3.40095 3.42094 4.39073 4.73294 5.12159 5.27641 5.42429 5.43173 5.62141 5.81307 5.93757 6.01555 6.12809 6.20799 6.22191 6.35449 6.42757 6.51763 6.61038 6.73732 6.79013 7.09186 7.47043 7.70278 8.17156 8.32778 9.06925 9.69464 10.24695 11.17126 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058796 B = 0.010301 C = 0.009464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.106872 B = 2717.565170 C = 2957.868934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C -0.157 4.157 4 H 0.097 0.903 5 C 0.156 3.844 6 N -0.590 5.590 7 C -0.260 4.260 8 H 0.070 0.930 9 C 0.005 3.995 10 N -0.899 5.899 11 Si 0.904 3.096 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.289 1.289 15 C 0.172 3.828 16 C -0.194 4.194 17 C 0.373 3.627 18 O -0.482 6.482 19 H 0.072 0.928 20 H 0.045 0.955 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.026 0.974 25 H 0.066 0.934 26 H 0.256 0.744 27 H 0.101 0.899 28 H 0.025 0.975 29 H 0.089 0.911 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -3.580 -1.813 7.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.145 4.145 3 C -0.178 4.178 4 H 0.115 0.885 5 C 0.029 3.971 6 N -0.311 5.311 7 C -0.389 4.389 8 H 0.087 0.913 9 C -0.194 4.194 10 N -0.543 5.543 11 Si 0.734 3.266 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.216 1.216 15 C 0.045 3.955 16 C -0.233 4.233 17 C 0.252 3.748 18 O -0.358 6.358 19 H 0.091 0.909 20 H 0.064 0.936 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.043 0.957 29 H 0.107 0.893 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.000 -3.749 -1.339 8.053 hybrid contribution 0.460 0.760 -0.623 1.084 sum -6.541 -2.989 -1.962 7.454 Atomic orbital electron populations 1.21921 0.96122 1.01111 1.02426 1.21330 0.95865 0.95568 1.01713 1.22526 1.01122 0.96321 0.97826 0.88462 1.20933 0.88293 0.88080 0.99827 1.44134 1.58753 1.10592 1.17638 1.19239 1.13390 1.18117 0.88190 0.91274 1.25106 0.96393 1.01398 0.96490 1.70030 1.32228 1.35779 1.16216 0.86202 0.78412 0.81273 0.80754 1.20101 1.21408 1.21608 1.20857 0.86413 1.01017 0.87176 1.23040 1.02713 0.95455 1.02135 1.24871 0.75277 0.88613 0.86080 1.90240 1.30301 1.66919 1.48330 0.90945 0.93577 0.93490 0.91928 0.92006 0.95626 0.91509 0.93406 0.88061 0.95689 0.89312 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.66 37.16 0.36 -1.92 16 2 C -0.11 -1.65 5.09 -26.73 -0.14 -1.78 16 3 C -0.16 -2.78 2.64 -91.27 -0.24 -3.02 16 4 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 5 C 0.16 3.17 5.84 -3.64 -0.02 3.15 16 6 N -0.59 -14.23 2.92 -172.18 -0.50 -14.73 16 7 C -0.26 -6.81 9.54 -15.06 -0.14 -6.96 16 8 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 9 C 0.01 0.14 4.88 -17.43 -0.09 0.06 16 10 N -0.90 -25.18 11.23 55.49 0.62 -24.55 16 11 Si 0.90 20.84 29.59 -169.99 -5.03 15.81 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.17 3.99 5.43 -3.64 -0.02 3.97 16 16 C -0.19 -3.76 6.34 -27.38 -0.17 -3.93 16 17 C 0.37 7.19 6.35 -28.45 -0.18 7.01 16 18 O -0.48 -9.85 14.69 6.00 0.09 -9.76 16 19 H 0.07 1.18 5.75 -51.93 -0.30 0.88 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 24 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 25 H 0.07 1.30 7.92 -51.93 -0.41 0.89 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.10 2.58 5.91 -51.93 -0.31 2.27 16 28 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 244.52 15.07 3.68 3.68 Total: -1.00 -28.26 244.52 -6.15 -34.41 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.37 Total: -1.43 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -0.64 Total: -3.43 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.12 Total: -39.28 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.26 -6.15 -34.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229756299.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.103 kcal (2) G-P(sol) polarization free energy of solvation -28.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds