Wall clock time and date at job start Mon Mar 30 2020 02:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46722 * 2 1 4 4 H 1.08996 * 109.67196 * 304.49660 * 3 2 1 5 5 C 1.53398 * 109.67255 * 183.96300 * 3 2 1 6 6 N 1.46853 * 108.77715 * 190.84016 * 5 3 2 7 7 C 1.36942 * 120.38578 * 237.60153 * 6 5 3 8 8 H 1.08005 * 119.99636 * 29.09540 * 7 6 5 9 9 C 1.38810 * 120.00397 * 209.09811 * 7 6 5 10 10 N 1.31620 * 119.99933 * 17.95018 * 9 7 6 11 11 Si 1.86801 * 120.00273 * 197.95037 * 9 7 6 12 12 H 1.48495 * 109.46806 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47188 * 119.99929 * 11 9 7 14 14 H 1.48498 * 109.47216 * 239.99903 * 11 9 7 15 15 C 1.46862 * 119.23650 * 57.62297 * 6 5 3 16 16 C 1.53396 * 108.77496 * 302.37657 * 15 6 5 17 17 C 1.51296 * 109.67522 * 64.99944 * 3 2 1 18 18 O 1.20754 * 120.80509 * 352.71462 * 17 3 2 19 19 H 1.08995 * 109.47508 * 299.99989 * 1 2 3 20 20 H 1.09003 * 109.47181 * 60.00394 * 1 2 3 21 21 H 1.09002 * 109.46726 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47508 * 240.00011 * 2 1 3 23 23 H 1.09003 * 109.47181 * 119.99606 * 2 1 3 24 24 H 1.09000 * 109.58745 * 310.62938 * 5 3 2 25 25 H 1.09001 * 109.58508 * 71.05432 * 5 3 2 26 26 H 0.96999 * 119.99916 * 180.02562 * 10 9 7 27 27 H 1.09001 * 109.58729 * 182.59215 * 15 6 5 28 28 H 1.08995 * 109.58708 * 62.16607 * 15 6 5 29 29 H 1.08996 * 109.67855 * 289.69917 * 16 15 6 30 30 H 1.09000 * 109.67219 * 169.15667 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6141 1.9822 -0.8459 5 6 3.5706 1.4492 -0.0998 6 7 4.0555 2.8104 0.1620 7 6 4.8159 3.4660 -0.7692 8 1 4.6916 3.2463 -1.8194 9 6 5.7464 4.4128 -0.3637 10 7 6.1569 4.4386 0.8866 11 14 6.4160 5.6504 -1.5922 12 1 5.8000 5.4108 -2.9219 13 1 6.0913 7.0259 -1.1363 14 1 7.8896 5.4981 -1.6952 15 6 3.7159 3.4604 1.4344 16 6 2.1890 3.5056 1.5737 17 6 1.6420 2.1235 1.2911 18 8 0.9061 1.5770 2.0772 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.9879 0.7643 0.6383 25 1 3.8729 1.1398 -1.1004 26 1 6.8068 5.1005 1.1701 27 1 4.1138 4.4752 1.4440 28 1 4.1416 2.8911 2.2606 29 1 1.7760 4.2168 0.8585 30 1 1.9216 3.8059 2.5869 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229756299.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:32 Heat of formation + Delta-G solvation = -46.467888 kcal Electronic energy + Delta-G solvation = -12981.404531 eV Core-core repulsion = 10776.207042 eV Total energy + Delta-G solvation = -2205.197489 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.98020 -37.84785 -35.45548 -33.68349 -31.66079 -29.94227 -26.57399 -24.67418 -23.45898 -22.23566 -20.05955 -18.58276 -17.16262 -16.82896 -16.32140 -15.60373 -15.45076 -15.04778 -14.90384 -14.27450 -13.86547 -13.25548 -13.15019 -13.00243 -12.75018 -12.48856 -12.40003 -12.10262 -12.00785 -11.84318 -11.73125 -11.46251 -10.60670 -10.09060 -8.77566 -7.91192 -5.38983 1.03969 1.49840 1.52670 1.62570 2.50715 3.20476 3.26766 3.54220 3.93394 4.06048 4.26574 4.37249 4.45574 4.54671 4.60166 4.81176 4.88681 4.98060 5.02524 5.09742 5.16497 5.25550 5.38338 5.48581 5.56884 5.66406 6.36146 6.62597 7.09172 7.77005 8.29170 9.16010 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.058796 B = 0.010301 C = 0.009464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.106872 B = 2717.565170 C = 2957.868934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.146 4.146 4 H 0.110 0.890 5 C 0.155 3.845 6 N -0.607 5.607 7 C -0.266 4.266 8 H 0.076 0.924 9 C -0.047 4.047 10 N -0.933 5.933 11 Si 0.968 3.032 12 H -0.263 1.263 13 H -0.290 1.290 14 H -0.295 1.295 15 C 0.179 3.821 16 C -0.184 4.184 17 C 0.373 3.627 18 O -0.491 6.491 19 H 0.050 0.950 20 H 0.058 0.942 21 H 0.065 0.935 22 H 0.085 0.915 23 H 0.050 0.950 24 H 0.017 0.983 25 H 0.077 0.923 26 H 0.252 0.748 27 H 0.076 0.924 28 H 0.002 0.998 29 H 0.101 0.899 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.848 -4.014 -3.181 9.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.166 4.166 4 H 0.128 0.872 5 C 0.029 3.971 6 N -0.329 5.329 7 C -0.395 4.395 8 H 0.093 0.907 9 C -0.242 4.242 10 N -0.579 5.579 11 Si 0.796 3.204 12 H -0.187 1.187 13 H -0.217 1.217 14 H -0.222 1.222 15 C 0.052 3.948 16 C -0.224 4.224 17 C 0.252 3.748 18 O -0.368 6.368 19 H 0.069 0.931 20 H 0.077 0.923 21 H 0.084 0.916 22 H 0.103 0.897 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.020 0.980 29 H 0.120 0.880 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.096 -4.205 -2.719 9.520 hybrid contribution 0.781 0.835 -0.171 1.156 sum -7.316 -3.370 -2.890 8.557 Atomic orbital electron populations 1.21866 0.95037 1.02286 1.01978 1.21341 0.96730 0.93770 1.02341 1.22422 0.98925 0.98044 0.97227 0.87205 1.21039 0.89947 0.86054 1.00074 1.44369 1.58997 1.12155 1.17413 1.19580 1.13032 1.18015 0.88909 0.90664 1.25850 0.97137 1.03221 0.98029 1.70172 1.33159 1.36536 1.18021 0.85200 0.77243 0.78719 0.79206 1.18746 1.21664 1.22174 1.20605 0.88722 0.99058 0.86402 1.22902 0.99737 0.96397 1.03355 1.25015 0.74885 0.88336 0.86552 1.90251 1.30861 1.66943 1.48735 0.93068 0.92266 0.91597 0.89654 0.93071 0.96451 0.90455 0.93865 0.90624 0.97986 0.88038 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.66 71.98 0.70 -3.27 16 2 C -0.10 -2.91 5.09 30.60 0.16 -2.76 16 3 C -0.15 -4.83 2.64 -11.22 -0.03 -4.86 16 4 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 5 C 0.15 6.09 5.84 86.45 0.50 6.60 16 6 N -0.61 -29.03 2.92 -698.65 -2.04 -31.08 16 7 C -0.27 -13.75 9.54 84.03 0.80 -12.95 16 8 H 0.08 3.73 7.89 -2.91 -0.02 3.71 16 9 C -0.05 -2.48 4.88 84.86 0.41 -2.07 16 10 N -0.93 -53.19 11.23 21.65 0.24 -52.95 16 11 Si 0.97 42.75 29.59 68.60 2.03 44.78 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 14 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 15 C 0.18 8.37 5.43 86.44 0.47 8.83 16 16 C -0.18 -6.97 6.34 30.17 0.19 -6.78 16 17 C 0.37 13.80 6.35 29.48 0.19 13.98 16 18 O -0.49 -19.34 14.69 -1.43 -0.02 -19.36 16 19 H 0.05 1.55 5.75 -2.39 -0.01 1.53 16 20 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.05 1.55 8.09 -2.39 -0.02 1.53 16 24 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 25 H 0.08 2.85 7.92 -2.39 -0.02 2.83 16 26 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 27 H 0.08 3.94 5.91 -2.39 -0.01 3.93 16 28 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.10 3.59 8.14 -2.39 -0.02 3.57 16 30 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -59.23 244.52 4.70 -54.52 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 1.11 Total: 7.35 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 3.39 Total: -3.27 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -1.80 Total: -84.02 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.02 Total: -19.36 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -59.23 4.70 -54.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229756299.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.056 kcal (2) G-P(sol) polarization free energy of solvation -59.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds