Wall clock time and date at job start Mon Mar 30 2020 02:06:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47316 * 2 1 4 4 H 1.09002 * 109.67389 * 55.49453 * 3 2 1 5 5 C 1.53884 * 109.62122 * 176.12578 * 3 2 1 6 6 N 1.46863 * 108.51051 * 169.31230 * 5 3 2 7 7 C 1.36941 * 120.37956 * 122.35158 * 6 5 3 8 8 H 1.07995 * 119.99551 * 209.24575 * 7 6 5 9 9 C 1.38808 * 119.99990 * 29.24008 * 7 6 5 10 10 N 1.31625 * 120.00248 * 17.74402 * 9 7 6 11 11 Si 1.86801 * 120.00016 * 197.74497 * 9 7 6 12 12 H 1.48502 * 109.46887 * 269.99842 * 11 9 7 13 13 H 1.48498 * 109.47173 * 30.00276 * 11 9 7 14 14 H 1.48498 * 109.47179 * 150.00180 * 11 9 7 15 15 C 1.46857 * 119.23628 * 302.07577 * 6 5 3 16 16 C 1.53396 * 108.77423 * 57.89926 * 15 6 5 17 17 C 1.51291 * 108.42325 * 310.56774 * 16 15 6 18 18 O 1.20761 * 120.80708 * 232.94184 * 17 16 15 19 19 H 1.08995 * 109.47218 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.47220 * 300.00314 * 1 2 3 21 21 H 1.09001 * 109.46871 * 59.99686 * 1 2 3 22 22 H 1.08990 * 109.47529 * 240.00026 * 2 1 3 23 23 H 1.09005 * 109.47277 * 119.99680 * 2 1 3 24 24 H 1.09002 * 109.74190 * 49.59821 * 5 3 2 25 25 H 1.09000 * 109.69530 * 289.00639 * 5 3 2 26 26 H 0.96991 * 120.00240 * 179.97438 * 10 9 7 27 27 H 1.09001 * 109.58271 * 177.67923 * 15 6 5 28 28 H 1.08998 * 109.59028 * 297.96360 * 15 6 5 29 29 H 1.08993 * 109.67749 * 70.30468 * 16 15 6 30 30 H 1.09002 * 109.67247 * 190.80077 * 16 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6142 1.9823 0.8458 5 6 3.5758 1.4476 0.0979 6 7 4.0550 2.8114 -0.1611 7 6 4.8144 3.4673 0.7707 8 1 4.7777 4.5447 0.8357 9 6 5.6312 2.7474 1.6318 10 7 5.9528 1.5032 1.3474 11 14 6.2738 3.5444 3.1942 12 1 7.5733 4.2062 2.9138 13 1 5.2966 4.5550 3.6725 14 1 6.4626 2.5055 4.2383 15 6 3.7155 3.4614 -1.4335 16 6 2.1886 3.5058 -1.5733 17 6 1.6422 2.1235 -1.2912 18 8 0.9062 1.5770 -2.0773 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8900 24 1 3.9942 0.7664 -0.6430 25 1 3.8812 1.1365 1.0970 26 1 6.5238 1.0003 1.9488 27 1 4.1129 4.4763 -1.4428 28 1 4.1439 2.8937 -2.2596 29 1 1.7751 4.2168 -0.8582 30 1 1.9214 3.8068 -2.5863 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229756307.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:34 Heat of formation + Delta-G solvation = -46.405214 kcal Electronic energy + Delta-G solvation = -13043.571246 eV Core-core repulsion = 10838.376475 eV Total energy + Delta-G solvation = -2205.194771 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.95537 -37.83314 -35.25816 -34.09729 -31.12989 -30.22254 -26.57085 -24.68718 -23.47015 -22.18850 -20.04779 -18.57975 -17.10294 -17.02966 -16.17859 -15.59891 -15.32585 -15.08928 -14.93882 -14.27553 -13.85914 -13.22114 -13.18985 -12.93088 -12.80858 -12.58599 -12.40543 -12.19643 -11.93851 -11.81215 -11.72759 -11.41502 -10.59823 -10.08679 -8.76687 -7.90840 -5.38889 1.04910 1.50179 1.52533 1.61645 2.51004 3.22022 3.26929 3.55055 3.98085 4.08714 4.25415 4.34871 4.41216 4.51333 4.61685 4.82865 4.95012 4.96158 5.02521 5.09893 5.15369 5.18247 5.38967 5.47312 5.58700 5.66746 6.37107 6.63509 7.09833 7.77606 8.29851 9.16121 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044838 B = 0.011732 C = 0.010180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.315504 B = 2386.137907 C = 2749.956033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.155 4.155 4 H 0.102 0.898 5 C 0.189 3.811 6 N -0.609 5.609 7 C -0.268 4.268 8 H 0.075 0.925 9 C -0.045 4.045 10 N -0.933 5.933 11 Si 0.967 3.033 12 H -0.286 1.286 13 H -0.267 1.267 14 H -0.294 1.294 15 C 0.146 3.854 16 C -0.175 4.175 17 C 0.372 3.628 18 O -0.491 6.491 19 H 0.064 0.936 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.000 1.000 25 H 0.074 0.926 26 H 0.252 0.748 27 H 0.079 0.921 28 H 0.018 0.982 29 H 0.108 0.892 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 1.625 -1.181 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.143 4.143 3 C -0.175 4.175 4 H 0.120 0.880 5 C 0.062 3.938 6 N -0.331 5.331 7 C -0.398 4.398 8 H 0.093 0.907 9 C -0.241 4.241 10 N -0.579 5.579 11 Si 0.795 3.205 12 H -0.212 1.212 13 H -0.192 1.192 14 H -0.220 1.220 15 C 0.020 3.980 16 C -0.214 4.214 17 C 0.251 3.749 18 O -0.368 6.368 19 H 0.083 0.917 20 H 0.076 0.924 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.087 0.913 24 H 0.018 0.982 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.036 0.964 29 H 0.126 0.874 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.785 1.258 -1.508 8.029 hybrid contribution 0.800 0.095 0.765 1.111 sum -6.985 1.353 -0.744 7.154 Atomic orbital electron populations 1.21849 0.94503 1.02296 1.02106 1.21303 0.96993 0.94389 1.01605 1.22634 0.99672 0.97644 0.97578 0.87997 1.20731 0.87133 0.85323 1.00575 1.44403 1.59016 1.14367 1.15290 1.19542 1.17709 0.91946 1.10602 0.90700 1.25845 0.97598 0.97262 1.03367 1.70159 1.38596 1.11589 1.37509 0.85289 0.78243 0.77529 0.79435 1.21238 1.19172 1.22005 1.21012 0.91461 0.98112 0.87436 1.22757 0.98774 0.95654 1.04234 1.25022 0.74962 0.88785 0.86095 1.90250 1.30878 1.67108 1.48533 0.91673 0.92396 0.92452 0.93253 0.91252 0.98159 0.90774 0.93839 0.90285 0.96379 0.87419 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.66 71.98 0.70 -3.68 16 2 C -0.10 -3.55 5.09 30.59 0.16 -3.40 16 3 C -0.15 -5.84 2.66 -11.05 -0.03 -5.87 16 4 H 0.10 3.72 8.14 -2.39 -0.02 3.70 16 5 C 0.19 8.82 4.77 86.61 0.41 9.23 16 6 N -0.61 -29.13 2.92 -697.69 -2.03 -31.16 16 7 C -0.27 -13.91 9.54 84.03 0.80 -13.10 16 8 H 0.08 3.71 7.89 -2.91 -0.02 3.69 16 9 C -0.04 -2.39 4.89 84.86 0.41 -1.97 16 10 N -0.93 -53.19 11.23 21.65 0.24 -52.95 16 11 Si 0.97 42.73 29.59 68.60 2.03 44.76 16 12 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 14 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 15 C 0.15 5.71 6.52 86.44 0.56 6.28 16 16 C -0.17 -5.71 6.34 30.17 0.19 -5.52 16 17 C 0.37 13.69 6.35 29.48 0.19 13.88 16 18 O -0.49 -19.18 14.69 -1.45 -0.02 -19.20 16 19 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 20 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 21 H 0.06 1.83 5.75 -2.39 -0.01 1.82 16 22 H 0.05 1.76 8.09 -2.39 -0.02 1.74 16 23 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 24 H 0.00 0.01 8.12 -2.39 -0.02 -0.01 16 25 H 0.07 3.87 5.92 -2.39 -0.01 3.86 16 26 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 27 H 0.08 2.88 7.92 -2.39 -0.02 2.86 16 28 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -59.26 244.56 4.72 -54.54 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 1.11 Total: 8.16 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 3.39 Total: -4.15 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -1.79 Total: -84.11 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.02 Total: -19.20 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -59.26 4.72 -54.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229756307.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.135 kcal (2) G-P(sol) polarization free energy of solvation -59.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds