Wall clock time and date at job start Mon Mar 30 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.05531 * 2 1 4 4 C 1.54266 * 110.03276 * 238.57546 * 2 1 3 5 5 C 1.54892 * 104.19791 * 217.10608 * 4 2 1 6 6 C 1.54894 * 102.74765 * 37.94509 * 5 4 2 7 7 C 1.53881 * 110.02967 * 121.41298 * 2 1 3 8 8 H 1.09005 * 110.07259 * 238.59014 * 7 2 1 9 9 C 1.50697 * 110.03453 * 359.97438 * 7 2 1 10 10 O 1.21297 * 119.99735 * 85.88721 * 9 7 2 11 11 N 1.34778 * 120.00223 * 265.88969 * 9 7 2 12 12 C 1.37091 * 119.99926 * 179.97438 * 11 9 7 13 13 H 1.08007 * 120.00448 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99917 * 180.27448 * 12 11 9 15 15 N 1.31405 * 120.00068 * 359.72611 * 14 12 11 16 16 Si 1.86809 * 120.00145 * 179.72239 * 14 12 11 17 17 H 1.48501 * 109.46629 * 60.00207 * 16 14 12 18 18 H 1.48492 * 109.47163 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46993 * 300.00165 * 16 14 12 20 20 H 1.09001 * 109.47235 * 297.12172 * 1 2 3 21 21 H 1.08998 * 109.46726 * 57.12711 * 1 2 3 22 22 H 1.08996 * 109.46912 * 177.12508 * 1 2 3 23 23 H 1.09000 * 110.48002 * 98.43152 * 4 2 1 24 24 H 1.08992 * 110.48952 * 335.78822 * 4 2 1 25 25 H 1.09000 * 110.75363 * 279.63000 * 5 4 2 26 26 H 1.09000 * 110.91407 * 156.33188 * 5 4 2 27 27 H 1.08997 * 110.48801 * 203.38189 * 6 5 4 28 28 H 1.08992 * 110.59968 * 80.79049 * 6 5 4 29 29 H 0.97002 * 119.99584 * 359.97438 * 11 9 7 30 30 H 0.97004 * 119.99986 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 3.3137 -1.5009 -0.7189 6 6 2.8874 -1.9407 0.7038 7 6 2.0570 -0.7535 1.2338 8 1 2.6865 -0.0957 1.8333 9 6 0.9037 -1.2585 2.0620 10 8 0.3907 -2.3260 1.8000 11 7 0.4423 -0.5241 3.0936 12 6 -0.6072 -0.9833 3.8465 13 1 -1.0646 -1.9335 3.6129 14 6 -1.0867 -0.2235 4.9065 15 7 -0.5306 0.9327 5.1906 16 14 -2.5218 -0.8457 5.9278 17 1 -2.1594 -2.1436 6.5518 18 1 -2.8393 0.1430 6.9893 19 1 -3.7079 -1.0307 5.0537 20 1 -0.3634 0.4685 0.9147 21 1 -0.3633 0.5578 -0.8631 22 1 -0.3633 -1.0263 -0.0515 23 1 2.3298 -0.0538 -2.0254 24 1 1.3143 -1.4661 -1.5965 25 1 4.1710 -0.8292 -0.6750 26 1 3.5357 -2.3680 -1.3410 27 1 3.7636 -2.1037 1.3313 28 1 2.2778 -2.8431 0.6596 29 1 0.8528 0.3294 3.3032 30 1 -0.8655 1.4633 5.9303 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230171076.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:24 Heat of formation + Delta-G solvation = -63.843182 kcal Electronic energy + Delta-G solvation = -12879.766414 eV Core-core repulsion = 10673.815476 eV Total energy + Delta-G solvation = -2205.950938 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.28258 -36.45797 -33.83144 -31.28321 -30.64812 -28.70691 -25.07046 -24.33909 -20.83452 -20.22986 -18.28593 -17.48332 -16.13793 -15.26236 -14.69582 -14.15439 -13.62560 -13.57463 -13.18628 -12.55424 -11.82868 -11.65939 -11.52647 -11.05780 -10.96799 -10.71322 -10.42869 -10.36333 -10.33427 -10.21012 -10.14027 -10.04898 -9.41479 -8.24362 -7.90578 -6.37285 -3.77855 3.22091 3.27444 3.31998 3.96434 4.20960 4.91858 4.96551 5.02015 5.35440 5.37534 5.68093 5.80689 5.92851 5.97007 5.98997 6.05984 6.18115 6.24052 6.36698 6.48294 6.55109 6.64201 6.73051 6.85072 6.99608 7.58761 8.11229 8.67022 9.22511 9.61517 10.13408 10.80433 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065498 B = 0.009190 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.389558 B = 3045.922570 C = 3103.478874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.105 4.105 8 H 0.074 0.926 9 C 0.457 3.543 10 O -0.596 6.596 11 N -0.564 5.564 12 C -0.300 4.300 13 H 0.101 0.899 14 C 0.022 3.978 15 N -0.903 5.903 16 Si 0.929 3.071 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 H 0.065 0.935 21 H 0.043 0.957 22 H 0.067 0.933 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.392 0.608 30 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 0.428 -7.934 9.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.097 4.097 3 H 0.087 0.913 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.126 4.126 8 H 0.093 0.907 9 C 0.244 3.756 10 O -0.482 6.482 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.119 0.881 14 C -0.179 4.179 15 N -0.544 5.544 16 Si 0.756 3.244 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 H 0.084 0.916 21 H 0.062 0.938 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.225 0.775 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.903 -0.135 -7.925 9.320 hybrid contribution -0.470 0.401 0.804 1.014 sum 4.434 0.266 -7.122 8.393 Atomic orbital electron populations 1.22016 0.94532 1.03019 1.01497 1.21592 0.96430 0.98256 0.93433 0.91329 1.22430 0.97363 0.98784 0.96883 1.22468 0.97399 0.99449 0.96729 1.22295 0.98678 0.98804 0.95003 1.21871 0.96539 0.97717 0.96523 0.90728 1.19697 0.86687 0.86229 0.83020 1.90479 1.62027 1.23918 1.71747 1.41971 1.30846 1.20346 1.26768 1.19658 1.08825 1.05404 1.09038 0.88095 1.25242 0.99205 0.95571 0.97924 1.69606 1.42114 1.12191 1.30472 0.85954 0.81067 0.78304 0.79104 1.19958 1.20996 1.19970 0.91626 0.93758 0.91361 0.92274 0.91435 0.92023 0.91964 0.92288 0.89697 0.77484 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 7.91 37.16 0.29 -2.54 16 2 C -0.08 -1.29 3.50 -89.50 -0.31 -1.60 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C -0.12 -1.66 6.36 -25.07 -0.16 -1.82 16 5 C -0.12 -1.66 6.91 -24.73 -0.17 -1.83 16 6 C -0.11 -1.85 6.32 -25.07 -0.16 -2.00 16 7 C -0.10 -1.96 3.29 -90.65 -0.30 -2.25 16 8 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 9 C 0.46 10.98 4.66 -10.99 -0.05 10.92 16 10 O -0.60 -16.26 14.47 5.54 0.08 -16.18 16 11 N -0.56 -14.57 4.84 -10.96 -0.05 -14.63 16 12 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 13 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 14 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 15 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 16 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 H 0.06 1.37 7.08 -51.93 -0.37 1.00 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 1.42 6.94 -51.93 -0.36 1.06 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.01 7.82 -51.93 -0.41 0.60 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.63 6.89 -51.93 -0.36 1.27 16 29 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 30 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 246.44 15.07 3.71 3.71 Total: -1.00 -29.98 246.44 -5.94 -35.92 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -4.28 Total: 8.27 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.10 Total: -9.24 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.67 Total: -38.81 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.08 Total: -16.18 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.98 -5.94 -35.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171076.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.927 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds