Wall clock time and date at job start Mon Mar 30 2020 02:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.05531 * 2 1 4 4 C 1.54266 * 110.03276 * 238.57546 * 2 1 3 5 5 C 1.54892 * 104.19791 * 217.10608 * 4 2 1 6 6 C 1.54894 * 102.74765 * 37.94509 * 5 4 2 7 7 C 1.53881 * 110.02967 * 121.41298 * 2 1 3 8 8 H 1.09005 * 110.07259 * 238.59014 * 7 2 1 9 9 C 1.50697 * 110.03453 * 359.97438 * 7 2 1 10 10 O 1.21297 * 119.99735 * 85.88721 * 9 7 2 11 11 N 1.34778 * 120.00223 * 265.88969 * 9 7 2 12 12 C 1.37091 * 119.99926 * 179.97438 * 11 9 7 13 13 H 1.08007 * 120.00448 * 359.97438 * 12 11 9 14 14 C 1.38949 * 119.99917 * 180.27448 * 12 11 9 15 15 N 1.31405 * 120.00068 * 359.72611 * 14 12 11 16 16 Si 1.86809 * 120.00145 * 179.72239 * 14 12 11 17 17 H 1.48501 * 109.46629 * 60.00207 * 16 14 12 18 18 H 1.48492 * 109.47163 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46993 * 300.00165 * 16 14 12 20 20 H 1.09001 * 109.47235 * 297.12172 * 1 2 3 21 21 H 1.08998 * 109.46726 * 57.12711 * 1 2 3 22 22 H 1.08996 * 109.46912 * 177.12508 * 1 2 3 23 23 H 1.09000 * 110.48002 * 98.43152 * 4 2 1 24 24 H 1.08992 * 110.48952 * 335.78822 * 4 2 1 25 25 H 1.09000 * 110.75363 * 279.63000 * 5 4 2 26 26 H 1.09000 * 110.91407 * 156.33188 * 5 4 2 27 27 H 1.08997 * 110.48801 * 203.38189 * 6 5 4 28 28 H 1.08992 * 110.59968 * 80.79049 * 6 5 4 29 29 H 0.97002 * 119.99584 * 359.97438 * 11 9 7 30 30 H 0.97004 * 119.99986 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7556 -1.2368 5 6 3.3137 -1.5009 -0.7189 6 6 2.8874 -1.9407 0.7038 7 6 2.0570 -0.7535 1.2338 8 1 2.6865 -0.0957 1.8333 9 6 0.9037 -1.2585 2.0620 10 8 0.3907 -2.3260 1.8000 11 7 0.4423 -0.5241 3.0936 12 6 -0.6072 -0.9833 3.8465 13 1 -1.0646 -1.9335 3.6129 14 6 -1.0867 -0.2235 4.9065 15 7 -0.5306 0.9327 5.1906 16 14 -2.5218 -0.8457 5.9278 17 1 -2.1594 -2.1436 6.5518 18 1 -2.8393 0.1430 6.9893 19 1 -3.7079 -1.0307 5.0537 20 1 -0.3634 0.4685 0.9147 21 1 -0.3633 0.5578 -0.8631 22 1 -0.3633 -1.0263 -0.0515 23 1 2.3298 -0.0538 -2.0254 24 1 1.3143 -1.4661 -1.5965 25 1 4.1710 -0.8292 -0.6750 26 1 3.5357 -2.3680 -1.3410 27 1 3.7636 -2.1037 1.3313 28 1 2.2778 -2.8431 0.6596 29 1 0.8528 0.3294 3.3032 30 1 -0.8655 1.4633 5.9303 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230171076.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:24 Heat of formation + Delta-G solvation = -83.310175 kcal Electronic energy + Delta-G solvation = -12880.610566 eV Core-core repulsion = 10673.815476 eV Total energy + Delta-G solvation = -2206.795090 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.96682 -38.08574 -35.90574 -33.29332 -32.07236 -30.15330 -26.94864 -25.87054 -22.50277 -21.46187 -20.22726 -19.33952 -17.77426 -16.81716 -16.56539 -15.89793 -15.28641 -15.26890 -14.53406 -14.23882 -13.58345 -13.42454 -13.09306 -12.88385 -12.51732 -12.41819 -12.12264 -11.87046 -11.69264 -11.62646 -11.55952 -11.42666 -11.30518 -10.21758 -9.99486 -8.46440 -5.95129 1.37893 1.39013 1.50248 2.07983 2.29090 3.19814 3.23397 3.68446 3.78061 3.98248 4.42044 4.44894 4.53501 4.65184 4.67527 4.71663 4.85367 4.97065 5.03355 5.13916 5.27028 5.29598 5.35953 5.40341 5.50564 5.59413 6.01436 6.60341 7.12812 7.58420 8.14128 8.70909 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065498 B = 0.009190 C = 0.009020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.389558 B = 3045.922570 C = 3103.478874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 H 0.096 0.904 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.105 4.105 8 H 0.091 0.909 9 C 0.457 3.543 10 O -0.635 6.635 11 N -0.574 5.574 12 C -0.334 4.334 13 H 0.076 0.924 14 C -0.013 4.013 15 N -0.921 5.921 16 Si 0.991 3.009 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.273 1.273 20 H 0.033 0.967 21 H 0.073 0.927 22 H 0.034 0.966 23 H 0.092 0.908 24 H 0.053 0.947 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.394 0.606 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.363 1.347 -8.775 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.096 4.096 3 H 0.114 0.886 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.127 4.127 8 H 0.110 0.890 9 C 0.246 3.754 10 O -0.523 6.523 11 N -0.209 5.209 12 C -0.463 4.463 13 H 0.094 0.906 14 C -0.213 4.213 15 N -0.562 5.562 16 Si 0.814 3.186 17 H -0.197 1.197 18 H -0.193 1.193 19 H -0.198 1.198 20 H 0.052 0.948 21 H 0.092 0.908 22 H 0.054 0.946 23 H 0.111 0.889 24 H 0.072 0.928 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.228 0.772 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.973 0.798 -8.773 10.643 hybrid contribution -0.794 0.102 1.043 1.315 sum 5.178 0.900 -7.730 9.347 Atomic orbital electron populations 1.21932 0.96508 1.00928 1.01170 1.21694 0.94656 0.99819 0.93457 0.88593 1.22430 0.97231 0.98986 0.96437 1.22457 0.97783 1.00506 0.94074 1.22319 0.98275 0.96607 0.97891 1.22002 0.94683 0.99101 0.96879 0.89037 1.20699 0.87168 0.85261 0.82306 1.90448 1.63599 1.25693 1.72548 1.42039 1.30821 1.20663 1.27403 1.19618 1.10597 1.05321 1.10813 0.90566 1.26025 1.01362 0.95586 0.98329 1.69669 1.42971 1.12707 1.30840 0.85026 0.77760 0.78076 0.77699 1.19728 1.19318 1.19800 0.94777 0.90809 0.94647 0.88920 0.92826 0.89322 0.90337 0.90912 0.92966 0.77244 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 7.91 71.98 0.57 -4.89 16 2 C -0.08 -2.40 3.50 -10.07 -0.04 -2.43 16 3 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 4 C -0.11 -2.85 6.36 31.67 0.20 -2.65 16 5 C -0.11 -2.59 6.91 31.89 0.22 -2.37 16 6 C -0.11 -3.63 6.32 31.67 0.20 -3.43 16 7 C -0.11 -3.83 3.29 -10.81 -0.04 -3.87 16 8 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 9 C 0.46 22.56 4.66 87.66 0.41 22.97 16 10 O -0.63 -36.24 14.47 -3.08 -0.04 -36.28 16 11 N -0.57 -30.56 4.84 -306.98 -1.49 -32.05 16 12 C -0.33 -19.51 9.68 84.04 0.81 -18.69 16 13 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 14 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 15 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 16 Si 0.99 43.92 29.55 68.60 2.03 45.95 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 H 0.03 1.44 7.08 -2.39 -0.02 1.42 16 21 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 22 H 0.03 1.51 6.94 -2.39 -0.02 1.49 16 23 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.05 1.50 7.82 -2.39 -0.02 1.48 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.05 2.03 6.89 -2.39 -0.02 2.01 16 29 H 0.39 20.20 7.90 -92.71 -0.73 19.46 16 30 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -66.58 246.44 3.98 -62.60 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 0.39 Total: 25.99 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 2.81 Total: -15.63 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.20 Total: -82.62 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.04 Total: -36.28 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -66.58 3.98 -62.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171076.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.708 kcal (2) G-P(sol) polarization free energy of solvation -66.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds