Wall clock time and date at job start Mon Mar 30 2020 02:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.01464 * 2 1 4 4 C 1.53876 * 110.03202 * 121.39203 * 2 1 3 5 5 C 1.54264 * 106.60102 * 119.33660 * 4 2 1 6 6 C 1.54894 * 104.19615 * 23.60756 * 5 4 2 7 7 C 1.54263 * 110.03396 * 238.60581 * 2 1 3 8 8 H 1.08996 * 110.48639 * 335.74057 * 7 2 1 9 9 C 1.50705 * 110.48184 * 98.37852 * 7 2 1 10 10 O 1.21291 * 120.00140 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99739 * 179.97438 * 9 7 2 12 12 C 1.37094 * 120.00039 * 179.97438 * 11 9 7 13 13 H 1.08003 * 120.00119 * 0.02562 * 12 11 9 14 14 C 1.38956 * 120.00411 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99503 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00386 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46735 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47204 * 120.00089 * 16 14 12 19 19 H 1.48503 * 109.47065 * 240.00529 * 16 14 12 20 20 H 1.08996 * 109.47221 * 300.69929 * 1 2 3 21 21 H 1.09004 * 109.46893 * 60.70496 * 1 2 3 22 22 H 1.09004 * 109.47072 * 180.69711 * 1 2 3 23 23 H 1.09002 * 110.03233 * 238.62459 * 4 2 1 24 24 H 1.09003 * 110.02920 * 0.04992 * 4 2 1 25 25 H 1.08995 * 110.48853 * 142.29018 * 5 4 2 26 26 H 1.09007 * 110.48608 * 264.79840 * 5 4 2 27 27 H 1.08997 * 110.75486 * 80.37417 * 6 5 4 28 28 H 1.08997 * 110.75448 * 203.56008 * 6 5 4 29 29 H 0.96998 * 120.00311 * 0.02562 * 11 9 7 30 30 H 0.96997 * 119.99631 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7530 1.2341 5 6 2.8886 -1.9396 0.7044 6 6 3.3151 -1.4996 -0.7181 7 6 2.0585 -0.7550 -1.2371 8 1 1.3146 -1.4659 -1.5967 9 6 2.4324 0.2159 -2.3274 10 8 2.2965 1.4082 -2.1507 11 7 2.9188 -0.2407 -3.4986 12 6 3.2584 0.6425 -4.4907 13 1 3.1367 1.7041 -4.3336 14 6 3.7594 0.1718 -5.6983 15 7 3.9070 -1.1199 -5.8896 16 14 4.2229 1.3751 -7.0498 17 1 3.9640 2.7624 -6.5875 18 1 5.6637 1.2231 -7.3752 19 1 3.4097 1.0966 -8.2608 20 1 -0.3633 0.5246 0.8836 21 1 -0.3633 0.5029 -0.8963 22 1 -0.3633 -1.0276 0.0125 23 1 2.6859 -0.0943 1.8330 24 1 1.2229 -1.1192 1.8324 25 1 3.7646 -2.1020 1.3323 26 1 2.2795 -2.8426 0.6601 27 1 4.1719 -0.8273 -0.6739 28 1 3.5379 -2.3666 -1.3400 29 1 3.0278 -1.1941 -3.6398 30 1 4.2570 -1.4484 -6.7324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230171080.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:26 Heat of formation + Delta-G solvation = -67.825996 kcal Electronic energy + Delta-G solvation = -12690.132733 eV Core-core repulsion = 10484.009087 eV Total energy + Delta-G solvation = -2206.123646 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.07227 -36.64319 -33.87745 -31.32782 -30.67469 -28.75740 -25.11335 -24.41160 -21.02431 -19.72892 -18.52826 -17.76731 -16.25971 -14.80388 -14.78229 -14.07532 -13.87438 -13.42629 -13.07634 -12.57443 -12.44292 -11.83203 -11.59168 -11.18710 -11.02196 -10.80778 -10.40456 -10.35137 -10.32098 -10.25931 -10.10817 -9.96348 -9.48228 -8.25959 -7.92585 -6.38381 -3.78871 3.18114 3.28273 3.35790 3.96438 4.20515 4.87503 4.91522 5.04387 5.33265 5.37643 5.64436 5.72044 5.83883 5.86829 5.93812 6.01073 6.15092 6.19994 6.29016 6.34552 6.44741 6.59830 6.65067 6.71039 6.96014 7.58449 8.10818 8.65862 9.21621 9.60581 10.12122 10.79501 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060752 B = 0.008882 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.780868 B = 3151.634141 C = 3399.909459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.083 4.083 3 H 0.090 0.910 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.100 4.100 8 H 0.083 0.917 9 C 0.449 3.551 10 O -0.596 6.596 11 N -0.562 5.562 12 C -0.300 4.300 13 H 0.103 0.897 14 C 0.021 3.979 15 N -0.902 5.902 16 Si 0.928 3.072 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.282 1.282 20 H 0.048 0.952 21 H 0.056 0.944 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.393 0.607 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.578 -3.326 9.231 10.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.109 0.891 4 C -0.158 4.158 5 C -0.160 4.160 6 C -0.151 4.151 7 C -0.122 4.122 8 H 0.101 0.899 9 C 0.235 3.765 10 O -0.481 6.481 11 N -0.197 5.197 12 C -0.429 4.429 13 H 0.120 0.880 14 C -0.180 4.180 15 N -0.543 5.543 16 Si 0.755 3.245 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.208 1.208 20 H 0.067 0.933 21 H 0.075 0.925 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.226 0.774 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.599 -2.621 9.167 9.882 hybrid contribution 0.326 -0.114 -0.918 0.981 sum -2.273 -2.735 8.249 8.983 Atomic orbital electron populations 1.21819 0.95505 1.00793 1.01480 1.21607 0.95276 1.00918 0.92406 0.89140 1.22242 0.99050 0.96945 0.97523 1.22342 0.99225 0.97914 0.96511 1.22480 0.97359 0.99668 0.95616 1.22064 0.97896 0.97190 0.95054 0.89855 1.19849 0.83654 0.89113 0.83907 1.90481 1.59587 1.16851 1.81221 1.41902 1.55874 1.09740 1.12233 1.19777 1.39001 0.91706 0.92438 0.87963 1.25261 0.97519 0.96535 0.98700 1.69625 1.46142 1.12298 1.26248 0.85819 0.78008 0.80383 0.80249 1.19255 1.20772 1.20767 0.93263 0.92482 0.93325 0.92213 0.92164 0.92067 0.91875 0.91197 0.91267 0.77413 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.84 37.16 0.33 -1.75 16 2 C -0.08 -1.40 2.88 -89.50 -0.26 -1.66 16 3 H 0.09 1.77 6.85 -51.93 -0.36 1.42 16 4 C -0.12 -1.63 6.46 -25.61 -0.17 -1.79 16 5 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 6 C -0.11 -1.84 6.32 -24.67 -0.16 -2.00 16 7 C -0.10 -1.87 2.79 -90.04 -0.25 -2.12 16 8 H 0.08 1.45 7.85 -51.93 -0.41 1.05 16 9 C 0.45 10.95 7.08 -10.98 -0.08 10.88 16 10 O -0.60 -16.58 15.00 5.55 0.08 -16.50 16 11 N -0.56 -14.68 5.28 -10.96 -0.06 -14.74 16 12 C -0.30 -8.54 9.68 -14.93 -0.14 -8.69 16 13 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 14 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 15 N -0.90 -24.93 13.05 55.50 0.72 -24.21 16 16 Si 0.93 21.37 29.55 -169.99 -5.02 16.34 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 30 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 251.35 15.07 3.79 3.79 Total: -1.00 -30.49 251.35 -5.85 -36.34 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.37 Total: 7.40 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: -0.99 Total: -8.42 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.67 Total: -38.95 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.08 Total: -16.50 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.49 -5.85 -36.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171080.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.489 kcal (2) G-P(sol) polarization free energy of solvation -30.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds