Wall clock time and date at job start Mon Mar 30 2020 02:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.01464 * 2 1 4 4 C 1.53876 * 110.03202 * 121.39203 * 2 1 3 5 5 C 1.54264 * 106.60102 * 119.33660 * 4 2 1 6 6 C 1.54894 * 104.19615 * 23.60756 * 5 4 2 7 7 C 1.54263 * 110.03396 * 238.60581 * 2 1 3 8 8 H 1.08996 * 110.48639 * 335.74057 * 7 2 1 9 9 C 1.50705 * 110.48184 * 98.37852 * 7 2 1 10 10 O 1.21291 * 120.00140 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99739 * 179.97438 * 9 7 2 12 12 C 1.37094 * 120.00039 * 179.97438 * 11 9 7 13 13 H 1.08003 * 120.00119 * 0.02562 * 12 11 9 14 14 C 1.38956 * 120.00411 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99503 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00386 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46735 * 0.02562 * 16 14 12 18 18 H 1.48493 * 109.47204 * 120.00089 * 16 14 12 19 19 H 1.48503 * 109.47065 * 240.00529 * 16 14 12 20 20 H 1.08996 * 109.47221 * 300.69929 * 1 2 3 21 21 H 1.09004 * 109.46893 * 60.70496 * 1 2 3 22 22 H 1.09004 * 109.47072 * 180.69711 * 1 2 3 23 23 H 1.09002 * 110.03233 * 238.62459 * 4 2 1 24 24 H 1.09003 * 110.02920 * 0.04992 * 4 2 1 25 25 H 1.08995 * 110.48853 * 142.29018 * 5 4 2 26 26 H 1.09007 * 110.48608 * 264.79840 * 5 4 2 27 27 H 1.08997 * 110.75486 * 80.37417 * 6 5 4 28 28 H 1.08997 * 110.75448 * 203.56008 * 6 5 4 29 29 H 0.96998 * 120.00311 * 0.02562 * 11 9 7 30 30 H 0.96997 * 119.99631 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7530 1.2341 5 6 2.8886 -1.9396 0.7044 6 6 3.3151 -1.4996 -0.7181 7 6 2.0585 -0.7550 -1.2371 8 1 1.3146 -1.4659 -1.5967 9 6 2.4324 0.2159 -2.3274 10 8 2.2965 1.4082 -2.1507 11 7 2.9188 -0.2407 -3.4986 12 6 3.2584 0.6425 -4.4907 13 1 3.1367 1.7041 -4.3336 14 6 3.7594 0.1718 -5.6983 15 7 3.9070 -1.1199 -5.8896 16 14 4.2229 1.3751 -7.0498 17 1 3.9640 2.7624 -6.5875 18 1 5.6637 1.2231 -7.3752 19 1 3.4097 1.0966 -8.2608 20 1 -0.3633 0.5246 0.8836 21 1 -0.3633 0.5029 -0.8963 22 1 -0.3633 -1.0276 0.0125 23 1 2.6859 -0.0943 1.8330 24 1 1.2229 -1.1192 1.8324 25 1 3.7646 -2.1020 1.3323 26 1 2.2795 -2.8426 0.6601 27 1 4.1719 -0.8273 -0.6739 28 1 3.5379 -2.3666 -1.3400 29 1 3.0278 -1.1941 -3.6398 30 1 4.2570 -1.4484 -6.7324 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230171080.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:26 Heat of formation + Delta-G solvation = -87.685442 kcal Electronic energy + Delta-G solvation = -12690.993903 eV Core-core repulsion = 10484.009087 eV Total energy + Delta-G solvation = -2206.984816 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.76271 -38.26351 -35.97459 -33.34872 -31.97303 -30.20559 -26.90775 -25.89388 -22.55798 -21.12282 -20.29532 -19.65640 -18.01511 -16.77294 -16.13170 -15.82121 -15.58464 -15.16403 -14.43322 -14.13741 -13.78691 -13.54597 -13.11025 -12.97817 -12.55092 -12.43363 -12.15665 -11.91940 -11.70917 -11.57509 -11.51401 -11.45562 -11.19493 -10.25715 -10.03599 -8.48902 -5.98137 1.34535 1.39293 1.53980 2.03766 2.28446 3.17604 3.21023 3.64998 3.82293 4.00612 4.44233 4.51372 4.53737 4.55365 4.65340 4.71884 4.87087 4.99652 5.06220 5.13229 5.25046 5.32224 5.39111 5.40061 5.51189 5.62637 5.98877 6.57383 7.09929 7.54717 8.10135 8.68809 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.060752 B = 0.008882 C = 0.008234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.780868 B = 3151.634141 C = 3399.909459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.052 0.948 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.097 4.097 8 H 0.100 0.900 9 C 0.443 3.557 10 O -0.637 6.637 11 N -0.571 5.571 12 C -0.338 4.338 13 H 0.076 0.924 14 C -0.013 4.013 15 N -0.919 5.919 16 Si 0.994 3.006 17 H -0.275 1.275 18 H -0.269 1.269 19 H -0.269 1.269 20 H 0.069 0.931 21 H 0.028 0.972 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.076 0.924 29 H 0.396 0.604 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -4.682 9.995 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.071 0.929 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.119 4.119 8 H 0.118 0.882 9 C 0.231 3.769 10 O -0.525 6.525 11 N -0.206 5.206 12 C -0.467 4.467 13 H 0.094 0.906 14 C -0.213 4.213 15 N -0.560 5.560 16 Si 0.817 3.183 17 H -0.199 1.199 18 H -0.194 1.194 19 H -0.194 1.194 20 H 0.088 0.912 21 H 0.047 0.953 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.230 0.770 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.761 -4.008 9.939 11.067 hybrid contribution 0.370 0.321 -1.152 1.252 sum -2.391 -3.687 8.787 9.825 Atomic orbital electron populations 1.21802 0.94028 1.02278 1.01120 1.21624 0.96623 0.99086 0.93230 0.92928 1.22213 1.00084 0.96767 0.95986 1.22329 1.00244 0.98349 0.93950 1.22491 0.95341 0.99094 0.98236 1.22136 0.99642 0.96412 0.93688 0.88175 1.20958 0.81873 0.89658 0.84402 1.90447 1.60863 1.19187 1.82033 1.41974 1.56486 1.09560 1.12593 1.19729 1.41596 0.91140 0.94261 0.90560 1.26071 0.96573 0.98427 1.00205 1.69682 1.45737 1.13431 1.27140 0.84866 0.78342 0.77701 0.77379 1.19920 1.19394 1.19378 0.91219 0.95269 0.90884 0.91895 0.89359 0.90133 0.89615 0.93401 0.90572 0.77015 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.84 71.98 0.64 -3.19 16 2 C -0.09 -2.84 2.88 -10.07 -0.03 -2.87 16 3 H 0.05 2.12 6.85 -2.39 -0.02 2.10 16 4 C -0.11 -2.71 6.46 31.32 0.20 -2.51 16 5 C -0.11 -2.53 6.83 31.67 0.22 -2.31 16 6 C -0.11 -3.56 6.32 31.93 0.20 -3.35 16 7 C -0.10 -3.59 2.79 -10.42 -0.03 -3.62 16 8 H 0.10 3.36 7.85 -2.39 -0.02 3.34 16 9 C 0.44 22.36 7.08 87.66 0.62 22.98 16 10 O -0.64 -37.25 15.00 -3.06 -0.05 -37.30 16 11 N -0.57 -30.73 5.28 -306.97 -1.62 -32.35 16 12 C -0.34 -19.90 9.68 84.04 0.81 -19.08 16 13 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 14 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 15 N -0.92 -50.59 13.05 21.67 0.28 -50.31 16 16 Si 0.99 43.84 29.55 68.60 2.03 45.86 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 20 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 21 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 22 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.09 1.67 7.67 -2.39 -0.02 1.66 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.05 1.69 8.05 -2.39 -0.02 1.67 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.40 20.30 7.90 -92.71 -0.73 19.57 16 30 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -67.45 251.35 4.13 -63.31 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.39 Total: 24.97 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 3.10 Total: -14.19 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.34 Total: -82.67 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -0.05 Total: -37.30 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -67.45 4.13 -63.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171080.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.371 kcal (2) G-P(sol) polarization free energy of solvation -67.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds