Wall clock time and date at job start Mon Mar 30 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.05425 * 2 1 4 4 C 1.53869 * 110.03216 * 238.57485 * 2 1 3 5 5 C 1.54266 * 106.60031 * 240.71686 * 4 2 1 6 6 C 1.54894 * 104.31305 * 336.32486 * 5 4 2 7 7 C 1.54266 * 110.02878 * 121.41108 * 2 1 3 8 8 H 1.09007 * 110.48724 * 24.08149 * 7 2 1 9 9 C 1.50704 * 110.48525 * 261.57635 * 7 2 1 10 10 O 1.21294 * 119.99916 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99857 * 180.02562 * 9 7 2 12 12 C 1.37097 * 120.00051 * 179.97438 * 11 9 7 13 13 H 1.07997 * 119.99850 * 359.97438 * 12 11 9 14 14 C 1.38947 * 120.00385 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00470 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 119.99857 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47187 * 89.99468 * 16 14 12 18 18 H 1.48498 * 109.47253 * 209.99896 * 16 14 12 19 19 H 1.48502 * 109.46983 * 330.00203 * 16 14 12 20 20 H 1.09004 * 109.47199 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47406 * 299.96839 * 1 2 3 22 22 H 1.09006 * 109.46643 * 59.97229 * 1 2 3 23 23 H 1.09001 * 110.02983 * 121.43438 * 4 2 1 24 24 H 1.08995 * 110.03881 * 0.02562 * 4 2 1 25 25 H 1.09002 * 110.48629 * 95.07240 * 5 4 2 26 26 H 1.08998 * 110.48744 * 217.58143 * 5 4 2 27 27 H 1.08996 * 110.75388 * 156.31523 * 6 5 4 28 28 H 1.08993 * 110.76071 * 279.69749 * 6 5 4 29 29 H 0.97003 * 120.00215 * 359.97438 * 11 9 7 30 30 H 0.96997 * 120.00271 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7537 -1.2336 5 6 2.8875 -1.9408 -0.7032 6 6 3.3167 -1.5027 0.7191 7 6 2.0584 -0.7554 1.2370 8 1 1.3132 -1.4642 1.5982 9 6 2.4334 0.2151 2.3272 10 8 2.2982 1.4075 2.1506 11 7 2.9197 -0.2418 3.4981 12 6 3.2613 0.6411 4.4898 13 1 3.1410 1.7027 4.3325 14 6 3.7623 0.1700 5.6972 15 7 4.0892 1.0162 6.6479 16 14 3.9710 -1.6663 5.9690 17 1 5.3275 -2.0808 5.5292 18 1 3.8023 -1.9756 7.4116 19 1 2.9492 -2.4025 5.1821 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5133 0.8902 22 1 -0.3633 0.5143 -0.8898 23 1 2.6868 -0.0956 -1.8323 24 1 1.2231 -1.1191 -1.8325 25 1 2.2772 -2.8427 -0.6568 26 1 3.7625 -2.1054 -1.3320 27 1 3.5365 -2.3707 1.3407 28 1 4.1739 -0.8311 0.6743 29 1 3.0281 -1.1954 3.6393 30 1 4.4393 0.6874 7.4906 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230171084.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:28 Heat of formation + Delta-G solvation = -60.682914 kcal Electronic energy + Delta-G solvation = -12743.382649 eV Core-core repulsion = 10537.568751 eV Total energy + Delta-G solvation = -2205.813899 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.23469 -36.79686 -33.94546 -31.70066 -30.83844 -28.95209 -25.18853 -24.35751 -21.03466 -19.73384 -18.97314 -18.07951 -16.23943 -15.04933 -14.86974 -14.29392 -13.84600 -13.24991 -13.09887 -12.69980 -12.58928 -12.20804 -11.94138 -11.35957 -11.13115 -10.92509 -10.57458 -10.49179 -10.41749 -10.34175 -10.06446 -9.94047 -9.54004 -8.40616 -8.14821 -6.28780 -3.79668 3.04936 3.08813 3.16545 3.79092 4.12511 4.61728 4.79590 4.92999 5.14848 5.29021 5.54521 5.61236 5.72122 5.74373 5.81271 5.90757 6.02286 6.06174 6.12348 6.20060 6.32220 6.44497 6.52460 6.59223 6.85813 7.60875 8.18858 8.63186 8.98023 9.46879 9.88146 10.84552 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049956 B = 0.010217 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.355250 B = 2739.865093 C = 3055.986124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 H 0.092 0.908 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.104 4.104 8 H 0.085 0.915 9 C 0.458 3.542 10 O -0.577 6.577 11 N -0.589 5.589 12 C -0.305 4.305 13 H 0.119 0.881 14 C 0.041 3.959 15 N -0.883 5.883 16 Si 0.878 3.122 17 H -0.270 1.270 18 H -0.277 1.277 19 H -0.269 1.269 20 H 0.048 0.952 21 H 0.057 0.943 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.371 0.629 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 -8.858 -11.586 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.102 4.102 3 H 0.110 0.890 4 C -0.158 4.158 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.126 4.126 8 H 0.103 0.897 9 C 0.244 3.756 10 O -0.460 6.460 11 N -0.227 5.227 12 C -0.434 4.434 13 H 0.136 0.864 14 C -0.162 4.162 15 N -0.523 5.523 16 Si 0.704 3.296 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.194 1.194 20 H 0.067 0.933 21 H 0.076 0.924 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.203 0.797 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.177 -8.004 -11.469 14.343 hybrid contribution 0.227 -1.459 0.532 1.569 sum -2.950 -9.463 -10.938 14.761 Atomic orbital electron populations 1.21829 0.95357 1.00851 1.01648 1.21608 0.95399 1.00971 0.92209 0.88959 1.22240 0.99114 0.96887 0.97521 1.22336 0.99324 0.97983 0.96319 1.22559 0.97476 0.99530 0.95868 1.22171 0.97970 0.97242 0.95194 0.89701 1.19754 0.83127 0.89242 0.83441 1.90525 1.58084 1.16696 1.80744 1.42239 1.58448 1.08074 1.13972 1.19461 1.39359 0.92674 0.91903 0.86352 1.25037 0.97428 0.98154 0.95557 1.69621 1.43033 1.34106 1.05531 0.86694 0.78987 0.85169 0.78734 1.19580 1.20176 1.19446 0.93313 0.92390 0.93108 0.92064 0.92048 0.91858 0.91934 0.91498 0.90855 0.79657 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.84 37.16 0.33 -1.65 16 2 C -0.08 -1.32 2.88 -89.50 -0.26 -1.58 16 3 H 0.09 1.74 6.85 -51.93 -0.36 1.38 16 4 C -0.12 -1.52 6.46 -25.62 -0.17 -1.69 16 5 C -0.12 -1.47 6.82 -25.07 -0.17 -1.65 16 6 C -0.12 -1.74 6.34 -24.55 -0.16 -1.89 16 7 C -0.10 -1.81 2.79 -89.92 -0.25 -2.06 16 8 H 0.08 1.35 7.85 -51.93 -0.41 0.95 16 9 C 0.46 10.73 7.08 -10.98 -0.08 10.65 16 10 O -0.58 -15.83 15.00 5.55 0.08 -15.74 16 11 N -0.59 -14.48 5.08 -10.96 -0.06 -14.53 16 12 C -0.31 -8.81 10.16 -14.93 -0.15 -8.96 16 13 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 14 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 15 N -0.88 -26.15 13.96 55.50 0.77 -25.38 16 16 Si 0.88 19.73 27.74 -169.99 -4.71 15.02 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 29 H 0.37 8.08 5.76 -40.82 -0.24 7.85 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 248.24 15.07 3.74 3.74 Total: -1.00 -31.64 248.24 -5.50 -37.14 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -4.33 Total: 7.54 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.00 Total: -7.79 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.72 Total: -39.91 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.08 Total: -15.74 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.64 -5.50 -37.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171084.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.541 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds