Wall clock time and date at job start Mon Mar 30 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 110.05425 * 2 1 4 4 C 1.53869 * 110.03216 * 238.57485 * 2 1 3 5 5 C 1.54266 * 106.60031 * 240.71686 * 4 2 1 6 6 C 1.54894 * 104.31305 * 336.32486 * 5 4 2 7 7 C 1.54266 * 110.02878 * 121.41108 * 2 1 3 8 8 H 1.09007 * 110.48724 * 24.08149 * 7 2 1 9 9 C 1.50704 * 110.48525 * 261.57635 * 7 2 1 10 10 O 1.21294 * 119.99916 * 359.97438 * 9 7 2 11 11 N 1.34775 * 119.99857 * 180.02562 * 9 7 2 12 12 C 1.37097 * 120.00051 * 179.97438 * 11 9 7 13 13 H 1.07997 * 119.99850 * 359.97438 * 12 11 9 14 14 C 1.38947 * 120.00385 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00470 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 119.99857 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47187 * 89.99468 * 16 14 12 18 18 H 1.48498 * 109.47253 * 209.99896 * 16 14 12 19 19 H 1.48502 * 109.46983 * 330.00203 * 16 14 12 20 20 H 1.09004 * 109.47199 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47406 * 299.96839 * 1 2 3 22 22 H 1.09006 * 109.46643 * 59.97229 * 1 2 3 23 23 H 1.09001 * 110.02983 * 121.43438 * 4 2 1 24 24 H 1.08995 * 110.03881 * 0.02562 * 4 2 1 25 25 H 1.09002 * 110.48629 * 95.07240 * 5 4 2 26 26 H 1.08998 * 110.48744 * 217.58143 * 5 4 2 27 27 H 1.08996 * 110.75388 * 156.31523 * 6 5 4 28 28 H 1.08993 * 110.76071 * 279.69749 * 6 5 4 29 29 H 0.97003 * 120.00215 * 359.97438 * 11 9 7 30 30 H 0.96997 * 120.00271 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7537 -1.2336 5 6 2.8875 -1.9408 -0.7032 6 6 3.3167 -1.5027 0.7191 7 6 2.0584 -0.7554 1.2370 8 1 1.3132 -1.4642 1.5982 9 6 2.4334 0.2151 2.3272 10 8 2.2982 1.4075 2.1506 11 7 2.9197 -0.2418 3.4981 12 6 3.2613 0.6411 4.4898 13 1 3.1410 1.7027 4.3325 14 6 3.7623 0.1700 5.6972 15 7 4.0892 1.0162 6.6479 16 14 3.9710 -1.6663 5.9690 17 1 5.3275 -2.0808 5.5292 18 1 3.8023 -1.9756 7.4116 19 1 2.9492 -2.4025 5.1821 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5133 0.8902 22 1 -0.3633 0.5143 -0.8898 23 1 2.6868 -0.0956 -1.8323 24 1 1.2231 -1.1191 -1.8325 25 1 2.2772 -2.8427 -0.6568 26 1 3.7625 -2.1054 -1.3320 27 1 3.5365 -2.3707 1.3407 28 1 4.1739 -0.8311 0.6743 29 1 3.0281 -1.1954 3.6393 30 1 4.4393 0.6874 7.4906 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230171084.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:28 Heat of formation + Delta-G solvation = -82.856566 kcal Electronic energy + Delta-G solvation = -12744.344171 eV Core-core repulsion = 10537.568751 eV Total energy + Delta-G solvation = -2206.775420 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.87534 -38.32356 -36.03348 -33.80827 -31.99983 -30.31995 -26.86268 -25.85167 -22.46259 -21.18017 -20.78345 -19.74396 -17.97682 -16.95836 -16.11674 -15.85132 -15.51984 -14.95361 -14.47741 -14.42762 -14.11087 -13.72771 -13.15122 -13.03463 -12.57545 -12.44778 -11.98542 -11.92559 -11.71321 -11.59457 -11.53154 -11.46159 -11.19828 -10.35107 -10.27394 -8.44302 -6.05356 1.27699 1.33013 1.42203 1.93387 2.20565 2.92657 3.11794 3.62111 3.77424 3.94248 4.39313 4.48207 4.50554 4.53478 4.62130 4.70554 4.86093 4.99423 5.05588 5.13421 5.25385 5.33412 5.39470 5.47472 5.55690 5.62965 5.92575 6.55927 6.84779 7.37207 7.93932 8.73557 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.049956 B = 0.010217 C = 0.009160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.355250 B = 2739.865093 C = 3055.986124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.049 0.951 4 C -0.114 4.114 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.099 4.099 8 H 0.112 0.888 9 C 0.454 3.546 10 O -0.628 6.628 11 N -0.588 5.588 12 C -0.332 4.332 13 H 0.053 0.947 14 C -0.014 4.014 15 N -0.934 5.934 16 Si 0.963 3.037 17 H -0.254 1.254 18 H -0.272 1.272 19 H -0.233 1.233 20 H 0.076 0.924 21 H 0.028 0.972 22 H 0.067 0.933 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.389 0.611 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.528 -13.035 -13.118 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 H 0.068 0.932 4 C -0.152 4.152 5 C -0.149 4.149 6 C -0.156 4.156 7 C -0.121 4.121 8 H 0.130 0.870 9 C 0.243 3.757 10 O -0.514 6.514 11 N -0.228 5.228 12 C -0.462 4.462 13 H 0.071 0.929 14 C -0.213 4.213 15 N -0.574 5.574 16 Si 0.782 3.218 17 H -0.178 1.178 18 H -0.197 1.197 19 H -0.156 1.156 20 H 0.095 0.905 21 H 0.047 0.953 22 H 0.086 0.914 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.225 0.775 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.544 -12.188 -13.027 18.188 hybrid contribution 0.325 0.022 0.996 1.048 sum -3.219 -12.166 -12.030 17.410 Atomic orbital electron populations 1.21817 0.93996 1.02443 1.01097 1.21639 0.96668 0.99055 0.93419 0.93214 1.22213 1.00135 0.96877 0.95930 1.22329 1.00242 0.98268 0.94028 1.22622 0.95174 0.99401 0.98415 1.22275 1.00170 0.96364 0.93266 0.87042 1.21057 0.80872 0.89761 0.84044 1.90503 1.59511 1.19662 1.81722 1.42074 1.58968 1.08295 1.13498 1.19039 1.41917 0.90882 0.94312 0.92878 1.26132 0.95790 1.05235 0.94153 1.69802 1.43634 1.37593 1.06379 0.85394 0.80555 0.76527 0.79286 1.17842 1.19680 1.15603 0.90508 0.95309 0.91431 0.92146 0.89387 0.89285 0.90142 0.89397 0.93098 0.77538 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.84 71.98 0.64 -2.98 16 2 C -0.09 -2.72 2.88 -10.07 -0.03 -2.75 16 3 H 0.05 1.94 6.85 -2.39 -0.02 1.93 16 4 C -0.11 -2.50 6.46 31.32 0.20 -2.29 16 5 C -0.11 -2.15 6.82 31.67 0.22 -1.94 16 6 C -0.12 -3.16 6.34 32.01 0.20 -2.96 16 7 C -0.10 -3.29 2.79 -10.34 -0.03 -3.32 16 8 H 0.11 3.15 7.85 -2.38 -0.02 3.13 16 9 C 0.45 21.77 7.08 87.66 0.62 22.39 16 10 O -0.63 -36.69 15.00 -3.07 -0.05 -36.74 16 11 N -0.59 -29.15 5.08 -306.98 -1.56 -30.71 16 12 C -0.33 -20.13 10.16 84.04 0.85 -19.28 16 13 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 14 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 15 N -0.93 -57.27 13.96 21.66 0.30 -56.97 16 16 Si 0.96 39.56 27.74 68.60 1.90 41.47 16 17 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 20 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 21 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 22 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.09 1.50 7.67 -2.39 -0.02 1.49 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.58 8.05 -2.39 -0.02 1.56 16 29 H 0.39 16.11 5.76 -92.71 -0.53 15.57 16 30 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -75.34 248.24 4.27 -71.07 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.53 Total: 25.36 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 3.14 Total: -13.48 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -1.26 Total: -87.67 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.05 Total: -36.74 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 1.90 Total: 41.47 kcal Total: -75.34 4.27 -71.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171084.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.782 kcal (2) G-P(sol) polarization free energy of solvation -75.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds