Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.01792 * 2 1 4 4 C 1.54261 * 110.07423 * 121.41534 * 2 1 3 5 5 C 1.55234 * 104.23550 * 142.91800 * 4 2 1 6 6 C 1.54894 * 102.58823 * 322.08709 * 5 4 2 7 7 C 1.53872 * 110.03469 * 238.60733 * 2 1 3 8 8 H 1.09008 * 110.03336 * 121.37916 * 7 2 1 9 9 C 1.50697 * 110.03325 * 359.95358 * 7 2 1 10 10 O 1.21299 * 120.00143 * 274.34376 * 9 7 2 11 11 N 1.34781 * 120.00397 * 94.33938 * 9 7 2 12 12 C 1.37089 * 120.00163 * 180.02562 * 11 9 7 13 13 H 1.08006 * 120.00407 * 359.97438 * 12 11 9 14 14 C 1.38956 * 120.00059 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99994 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99691 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47359 * 90.00254 * 16 14 12 18 18 H 1.48503 * 109.46696 * 210.00178 * 16 14 12 19 19 H 1.48496 * 109.47151 * 329.99739 * 16 14 12 20 20 H 1.08998 * 109.46969 * 182.70669 * 1 2 3 21 21 H 1.09001 * 109.47064 * 302.70900 * 1 2 3 22 22 H 1.09004 * 109.46824 * 62.70959 * 1 2 3 23 23 H 1.09001 * 110.48785 * 261.59969 * 4 2 1 24 24 H 1.09001 * 110.48879 * 24.10781 * 4 2 1 25 25 H 1.08997 * 110.90258 * 203.79640 * 5 4 2 26 26 H 1.09002 * 110.76791 * 80.31645 * 5 4 2 27 27 H 1.09001 * 110.48605 * 279.19227 * 6 5 4 28 28 H 1.08997 * 110.48935 * 156.67278 * 6 5 4 29 29 H 0.97000 * 119.99341 * 359.97438 * 11 9 7 30 30 H 0.97002 * 120.00031 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7552 1.2365 5 6 3.3179 -1.5016 0.7180 6 6 2.8885 -1.9396 -0.7043 7 6 2.0571 -0.7530 -1.2340 8 1 2.6860 -0.0943 -1.8330 9 6 0.9039 -1.2593 -2.0614 10 8 0.3893 -2.3253 -1.7966 11 7 0.4440 -0.5276 -3.0957 12 6 -0.6054 -0.9879 -3.8481 13 1 -1.0636 -1.9372 -3.6123 14 6 -1.0791 -0.2338 -4.9147 15 7 -2.0848 -0.6753 -5.6363 16 14 -0.2863 1.4076 -5.3230 17 1 0.8224 1.1955 -6.2878 18 1 -1.3000 2.3108 -5.9245 19 1 0.2487 2.0214 -4.0811 20 1 -0.3633 -1.0265 0.0485 21 1 -0.3633 0.5553 0.8647 22 1 -0.3633 0.4712 -0.9133 23 1 2.3305 -0.0533 2.0251 24 1 1.3150 -1.4647 1.5979 25 1 3.5388 -2.3695 1.3392 26 1 4.1748 -0.8294 0.6729 27 1 2.2788 -2.8419 -0.6578 28 1 3.7634 -2.1035 -1.3335 29 1 0.8553 0.3251 -3.3072 30 1 -2.4157 -0.1487 -6.3806 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230171088.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = -56.838253 kcal Electronic energy + Delta-G solvation = -12929.072576 eV Core-core repulsion = 10723.425394 eV Total energy + Delta-G solvation = -2205.647182 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.44599 -36.60231 -33.89708 -31.66492 -30.82307 -28.87094 -25.12188 -24.33140 -20.73124 -20.31836 -18.92085 -17.54559 -16.23471 -15.28867 -14.97536 -14.27812 -13.73528 -13.32787 -13.16094 -12.70328 -12.31600 -11.96355 -11.66141 -11.21004 -11.07130 -10.79150 -10.58571 -10.46938 -10.43358 -10.29808 -10.16581 -9.93742 -9.49355 -8.39327 -8.13034 -6.28218 -3.78877 3.05230 3.09203 3.16909 3.79002 4.12988 4.65004 4.85516 4.91217 5.18153 5.30795 5.57995 5.69524 5.77534 5.86630 5.88159 5.94856 6.00116 6.13664 6.21616 6.37819 6.38840 6.51819 6.61341 6.74976 6.88596 7.61532 8.19423 8.63973 8.98906 9.47576 9.89297 10.85155 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053953 B = 0.010406 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.849170 B = 2690.010180 C = 2787.758960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.080 4.080 3 H 0.069 0.931 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.110 4.110 7 C -0.107 4.107 8 H 0.074 0.926 9 C 0.466 3.534 10 O -0.577 6.577 11 N -0.592 5.592 12 C -0.304 4.304 13 H 0.119 0.881 14 C 0.041 3.959 15 N -0.883 5.883 16 Si 0.877 3.123 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.269 1.269 20 H 0.070 0.930 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.370 0.630 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.569 4.401 9.422 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.099 4.099 3 H 0.087 0.913 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.148 4.148 7 C -0.129 4.129 8 H 0.092 0.908 9 C 0.253 3.747 10 O -0.460 6.460 11 N -0.230 5.230 12 C -0.432 4.432 13 H 0.136 0.864 14 C -0.162 4.162 15 N -0.523 5.523 16 Si 0.704 3.296 17 H -0.197 1.197 18 H -0.202 1.202 19 H -0.194 1.194 20 H 0.089 0.911 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.079 0.921 29 H 0.203 0.797 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.050 3.716 9.392 13.562 hybrid contribution 0.472 1.464 -0.613 1.655 sum 9.522 5.179 8.780 13.949 Atomic orbital electron populations 1.22034 0.94395 1.03339 1.01456 1.21613 0.96504 0.98255 0.93497 0.91300 1.22487 0.97382 0.98831 0.96760 1.22530 0.97341 0.99525 0.96658 1.22304 0.98710 0.98687 0.95120 1.21917 0.96414 0.97947 0.96612 0.90768 1.19611 0.86491 0.86107 0.82474 1.90524 1.61230 1.23449 1.70839 1.42330 1.32145 1.19878 1.28651 1.19447 1.08052 1.07224 1.08513 0.86354 1.25033 0.96506 0.98267 0.96378 1.69624 1.24988 1.38516 1.19220 0.86704 0.79843 0.84024 0.79073 1.19654 1.20216 1.19441 0.91083 0.93507 0.91880 0.92203 0.91286 0.91779 0.91977 0.89538 0.92136 0.79726 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 7.91 37.16 0.29 -2.43 16 2 C -0.08 -1.23 3.50 -89.51 -0.31 -1.55 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.12 -1.57 6.37 -24.89 -0.16 -1.72 16 5 C -0.12 -1.56 6.93 -24.55 -0.17 -1.73 16 6 C -0.11 -1.75 6.30 -25.07 -0.16 -1.91 16 7 C -0.11 -1.87 3.29 -90.66 -0.30 -2.17 16 8 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 9 C 0.47 10.75 4.66 -10.98 -0.05 10.70 16 10 O -0.58 -15.50 14.46 5.54 0.08 -15.42 16 11 N -0.59 -14.40 4.66 -10.96 -0.05 -14.45 16 12 C -0.30 -8.68 10.16 -14.93 -0.15 -8.83 16 13 H 0.12 3.86 7.39 -52.48 -0.39 3.47 16 14 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 15 N -0.88 -26.09 13.96 55.50 0.77 -25.32 16 16 Si 0.88 19.73 27.74 -169.99 -4.71 15.02 16 17 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.27 -5.55 6.52 56.52 0.37 -5.19 16 20 H 0.07 1.43 6.92 -51.93 -0.36 1.07 16 21 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 1.23 7.10 -51.93 -0.37 0.86 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 1.59 6.90 -51.93 -0.36 1.23 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.37 8.05 5.76 -40.82 -0.24 7.82 16 30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 243.37 15.07 3.67 3.67 Total: -1.00 -31.18 243.37 -5.59 -36.77 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -4.24 Total: 8.33 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.10 Total: -8.60 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.72 Total: -39.76 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.08 Total: -15.42 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.18 -5.59 -36.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171088.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.065 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds