Wall clock time and date at job start Mon Mar 30 2020 02:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.01792 * 2 1 4 4 C 1.54261 * 110.07423 * 121.41534 * 2 1 3 5 5 C 1.55234 * 104.23550 * 142.91800 * 4 2 1 6 6 C 1.54894 * 102.58823 * 322.08709 * 5 4 2 7 7 C 1.53872 * 110.03469 * 238.60733 * 2 1 3 8 8 H 1.09008 * 110.03336 * 121.37916 * 7 2 1 9 9 C 1.50697 * 110.03325 * 359.95358 * 7 2 1 10 10 O 1.21299 * 120.00143 * 274.34376 * 9 7 2 11 11 N 1.34781 * 120.00397 * 94.33938 * 9 7 2 12 12 C 1.37089 * 120.00163 * 180.02562 * 11 9 7 13 13 H 1.08006 * 120.00407 * 359.97438 * 12 11 9 14 14 C 1.38956 * 120.00059 * 180.02562 * 12 11 9 15 15 N 1.31411 * 119.99994 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99691 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47359 * 90.00254 * 16 14 12 18 18 H 1.48503 * 109.46696 * 210.00178 * 16 14 12 19 19 H 1.48496 * 109.47151 * 329.99739 * 16 14 12 20 20 H 1.08998 * 109.46969 * 182.70669 * 1 2 3 21 21 H 1.09001 * 109.47064 * 302.70900 * 1 2 3 22 22 H 1.09004 * 109.46824 * 62.70959 * 1 2 3 23 23 H 1.09001 * 110.48785 * 261.59969 * 4 2 1 24 24 H 1.09001 * 110.48879 * 24.10781 * 4 2 1 25 25 H 1.08997 * 110.90258 * 203.79640 * 5 4 2 26 26 H 1.09002 * 110.76791 * 80.31645 * 5 4 2 27 27 H 1.09001 * 110.48605 * 279.19227 * 6 5 4 28 28 H 1.08997 * 110.48935 * 156.67278 * 6 5 4 29 29 H 0.97000 * 119.99341 * 359.97438 * 11 9 7 30 30 H 0.97002 * 120.00031 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7552 1.2365 5 6 3.3179 -1.5016 0.7180 6 6 2.8885 -1.9396 -0.7043 7 6 2.0571 -0.7530 -1.2340 8 1 2.6860 -0.0943 -1.8330 9 6 0.9039 -1.2593 -2.0614 10 8 0.3893 -2.3253 -1.7966 11 7 0.4440 -0.5276 -3.0957 12 6 -0.6054 -0.9879 -3.8481 13 1 -1.0636 -1.9372 -3.6123 14 6 -1.0791 -0.2338 -4.9147 15 7 -2.0848 -0.6753 -5.6363 16 14 -0.2863 1.4076 -5.3230 17 1 0.8224 1.1955 -6.2878 18 1 -1.3000 2.3108 -5.9245 19 1 0.2487 2.0214 -4.0811 20 1 -0.3633 -1.0265 0.0485 21 1 -0.3633 0.5553 0.8647 22 1 -0.3633 0.4712 -0.9133 23 1 2.3305 -0.0533 2.0251 24 1 1.3150 -1.4647 1.5979 25 1 3.5388 -2.3695 1.3392 26 1 4.1748 -0.8294 0.6729 27 1 2.2788 -2.8419 -0.6578 28 1 3.7634 -2.1035 -1.3335 29 1 0.8553 0.3251 -3.3072 30 1 -2.4157 -0.1487 -6.3806 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230171088.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:30 Heat of formation + Delta-G solvation = -78.674207 kcal Electronic energy + Delta-G solvation = -12930.019454 eV Core-core repulsion = 10723.425394 eV Total energy + Delta-G solvation = -2206.594060 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.07925 -38.14698 -35.96487 -33.76206 -32.11178 -30.24758 -26.91588 -25.83903 -22.35361 -21.48672 -20.89564 -19.30440 -17.80288 -16.85150 -16.74490 -15.78348 -15.36801 -14.98380 -14.57386 -14.36485 -14.27344 -13.47528 -13.13450 -12.92187 -12.50650 -12.43871 -11.98598 -11.86071 -11.70820 -11.64171 -11.56049 -11.43930 -11.32818 -10.31107 -10.23464 -8.42533 -6.02598 1.27828 1.33026 1.41802 1.97131 2.21177 2.94881 3.13522 3.65746 3.74911 3.90605 4.36303 4.42623 4.48607 4.62421 4.64282 4.70671 4.83218 4.96588 5.02444 5.13006 5.27040 5.29186 5.34802 5.46152 5.58258 5.59905 5.95239 6.58381 6.87949 7.40477 7.97857 8.75431 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.053953 B = 0.010406 C = 0.010041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.849170 B = 2690.010180 C = 2787.758960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.078 4.078 3 H 0.106 0.894 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.105 4.105 8 H 0.106 0.894 9 C 0.467 3.533 10 O -0.625 6.625 11 N -0.593 5.593 12 C -0.326 4.326 13 H 0.053 0.947 14 C -0.015 4.015 15 N -0.935 5.935 16 Si 0.961 3.039 17 H -0.256 1.256 18 H -0.273 1.273 19 H -0.233 1.233 20 H 0.030 0.970 21 H 0.075 0.925 22 H 0.037 0.963 23 H 0.093 0.907 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.387 0.613 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.601 7.521 10.627 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.097 4.097 3 H 0.124 0.876 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.127 4.127 8 H 0.125 0.875 9 C 0.256 3.744 10 O -0.511 6.511 11 N -0.233 5.233 12 C -0.455 4.455 13 H 0.071 0.929 14 C -0.214 4.214 15 N -0.576 5.576 16 Si 0.781 3.219 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.156 1.156 20 H 0.049 0.951 21 H 0.094 0.906 22 H 0.057 0.943 23 H 0.112 0.888 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.223 0.777 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.102 6.831 10.620 17.490 hybrid contribution -0.553 0.342 -0.949 1.150 sum 11.548 7.174 9.672 16.684 Atomic orbital electron populations 1.21986 0.96685 1.00882 1.01485 1.21736 0.94449 1.00230 0.93271 0.87596 1.22500 0.97170 0.99022 0.96610 1.22521 0.97821 1.00484 0.93981 1.22344 0.98416 0.96526 0.98057 1.22080 0.94301 0.99362 0.96946 0.87546 1.20828 0.86905 0.84991 0.81696 1.90506 1.63000 1.25782 1.71815 1.42174 1.31483 1.20809 1.28827 1.19003 1.10143 1.05846 1.10538 0.92854 1.26096 0.96727 1.03326 0.95228 1.69806 1.26894 1.40918 1.20004 0.85410 0.78989 0.77116 0.80346 1.18070 1.19835 1.15647 0.95106 0.90615 0.94350 0.88812 0.93216 0.90634 0.88904 0.93373 0.90454 0.77731 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 7.91 71.98 0.57 -4.69 16 2 C -0.08 -2.15 3.50 -10.07 -0.04 -2.19 16 3 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 4 C -0.12 -2.66 6.37 31.79 0.20 -2.46 16 5 C -0.11 -2.35 6.93 32.01 0.22 -2.13 16 6 C -0.12 -3.43 6.30 31.67 0.20 -3.23 16 7 C -0.11 -3.44 3.29 -10.82 -0.04 -3.48 16 8 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 9 C 0.47 21.91 4.66 87.66 0.41 22.32 16 10 O -0.63 -35.74 14.46 -3.09 -0.04 -35.79 16 11 N -0.59 -29.07 4.66 -306.97 -1.43 -30.50 16 12 C -0.33 -19.59 10.16 84.04 0.85 -18.74 16 13 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 14 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 15 N -0.94 -57.43 13.96 21.66 0.30 -57.13 16 16 Si 0.96 39.80 27.74 68.60 1.90 41.70 16 17 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 18 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.23 -8.23 6.52 99.48 0.65 -7.58 16 20 H 0.03 1.27 6.92 -2.39 -0.02 1.26 16 21 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 22 H 0.04 1.48 7.10 -2.38 -0.02 1.46 16 23 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.33 7.82 -2.39 -0.02 1.31 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.05 1.80 6.90 -2.39 -0.02 1.78 16 28 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.39 16.02 5.76 -92.71 -0.53 15.49 16 30 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -74.69 243.37 4.11 -70.57 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.53 Total: 26.14 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 2.85 Total: -15.00 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -1.13 Total: -87.63 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -0.04 Total: -35.79 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 1.90 Total: 41.70 kcal Total: -74.69 4.11 -70.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230171088.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.103 kcal (2) G-P(sol) polarization free energy of solvation -74.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds