Wall clock time and date at job start Mon Mar 30 2020 02:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46834 * 111.00049 * 2 1 4 4 C 1.53300 * 109.40039 * 189.75041 * 3 2 1 5 5 C 1.51436 * 108.24097 * 306.20262 * 4 3 2 6 6 O 1.20759 * 121.11328 * 229.04847 * 5 4 3 7 7 C 1.51437 * 117.77716 * 49.02977 * 5 4 3 8 8 C 1.46826 * 110.99927 * 124.67798 * 2 1 3 9 9 H 1.09002 * 109.50135 * 290.23709 * 8 2 1 10 10 C 1.53004 * 109.48209 * 50.27612 * 8 2 1 11 11 C 1.50702 * 109.47458 * 185.39457 * 10 8 2 12 12 H 1.08000 * 119.99528 * 5.14063 * 11 10 8 13 13 C 1.37872 * 120.00183 * 185.14931 * 11 10 8 14 14 N 1.31515 * 120.00136 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00175 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47145 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47052 * 119.99586 * 15 13 11 18 18 H 1.48494 * 109.47305 * 239.99666 * 15 13 11 19 19 H 1.09006 * 109.47250 * 52.60322 * 1 2 3 20 20 H 1.08999 * 109.47258 * 172.59335 * 1 2 3 21 21 H 1.08998 * 109.47852 * 292.59722 * 1 2 3 22 22 H 1.09000 * 109.48366 * 69.76470 * 3 2 1 23 23 H 1.09002 * 109.47713 * 309.72749 * 3 2 1 24 24 H 1.08993 * 109.71045 * 65.89144 * 4 3 2 25 25 H 1.09005 * 109.70647 * 186.52127 * 4 3 2 26 26 H 1.08997 * 109.70886 * 70.65701 * 7 5 4 27 27 H 1.08999 * 109.71146 * 191.24239 * 7 5 4 28 28 H 1.09001 * 109.46640 * 305.39252 * 10 8 2 29 29 H 1.08995 * 109.47551 * 65.38752 * 10 8 2 30 30 H 0.96996 * 120.00592 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3708 0.0000 4 6 3.5081 1.3355 -0.2449 5 6 4.1318 0.4064 0.7754 6 8 5.0943 0.7449 1.4214 7 6 3.5080 -0.9612 0.9589 8 6 1.9951 -0.7799 1.1273 9 1 1.7937 -0.2528 2.0599 10 6 1.3173 -2.1513 1.1595 11 6 1.7582 -2.9008 2.3903 12 1 2.3861 -2.4148 3.1224 13 6 1.3602 -4.2069 2.5816 14 7 0.5953 -4.7985 1.6902 15 14 1.9072 -5.1362 4.1069 16 1 2.7562 -4.2533 4.9465 17 1 0.7141 -5.5600 4.8828 18 1 2.6867 -6.3341 3.7037 19 1 -0.3634 0.6242 -0.8165 20 1 -0.3634 -1.0191 -0.1325 21 1 -0.3635 0.3949 0.9487 22 1 1.7936 1.8376 0.9642 23 1 1.5122 1.9455 -0.7904 24 1 3.7092 0.9656 -1.2502 25 1 3.9223 2.3374 -0.1314 26 1 3.7091 -1.5776 0.0827 27 1 3.9227 -1.4383 1.8469 28 1 0.2353 -2.0213 1.1813 29 1 1.5974 -2.7160 0.2703 30 1 0.3149 -5.7172 1.8249 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238331373.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:53 Heat of formation + Delta-G solvation = -43.676320 kcal Electronic energy + Delta-G solvation = -12804.819605 eV Core-core repulsion = 10599.743168 eV Total energy + Delta-G solvation = -2205.076438 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.56894 -37.31671 -33.43391 -31.49550 -31.25223 -27.35292 -25.37141 -23.90044 -22.24814 -19.83361 -18.65477 -16.58645 -15.64057 -15.13306 -14.75738 -14.51006 -14.38382 -14.09450 -13.41914 -12.56630 -12.31516 -12.06763 -11.81679 -11.46016 -11.25641 -10.97236 -10.91507 -10.68078 -10.56719 -10.03663 -9.65250 -9.15050 -8.86101 -8.39047 -7.86879 -6.05598 -4.07888 2.30842 3.28893 3.37099 3.41444 4.25762 4.44349 4.55322 5.17504 5.18406 5.30397 5.34559 5.60833 5.77528 5.85809 5.90930 5.95425 5.99593 6.12535 6.40812 6.48981 6.66729 6.81730 7.36521 7.46932 7.64738 7.73495 7.87795 7.97127 8.34890 8.98102 9.56427 11.05482 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040923 B = 0.010704 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.045145 B = 2615.316383 C = 3149.189785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.546 5.546 3 C 0.061 3.939 4 C -0.165 4.165 5 C 0.358 3.642 6 O -0.474 6.474 7 C -0.146 4.146 8 C 0.096 3.904 9 H 0.034 0.966 10 C 0.028 3.972 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.060 3.940 14 N -0.892 5.892 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.283 1.283 19 H 0.056 0.944 20 H 0.084 0.916 21 H 0.022 0.978 22 H 0.031 0.969 23 H 0.078 0.922 24 H 0.103 0.897 25 H 0.083 0.917 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.113 9.314 -4.235 10.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.271 5.271 3 C -0.068 4.068 4 C -0.203 4.203 5 C 0.235 3.765 6 O -0.349 6.349 7 C -0.184 4.184 8 C -0.011 4.011 9 H 0.052 0.948 10 C -0.009 4.009 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.531 5.531 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.209 1.209 19 H 0.075 0.925 20 H 0.103 0.897 21 H 0.040 0.960 22 H 0.049 0.951 23 H 0.097 0.903 24 H 0.121 0.879 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.041 0.959 29 H 0.050 0.950 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.683 9.108 -4.355 10.235 hybrid contribution -0.112 -0.236 1.480 1.503 sum 1.571 8.872 -2.875 9.458 Atomic orbital electron populations 1.22362 0.87009 1.03372 0.99217 1.61867 1.08117 1.11370 1.45700 1.22002 0.93336 0.91086 1.00354 1.22378 0.96681 1.00192 1.01065 1.25309 0.81255 0.90431 0.79459 1.90346 1.24496 1.77388 1.42687 1.22355 0.96541 0.94285 1.05263 1.21838 0.92459 0.97542 0.89275 0.94846 1.19288 0.95535 0.88198 0.97908 1.21210 1.31499 0.97345 1.05970 0.92581 1.24966 0.95085 0.97615 0.96473 1.69964 1.35527 1.12855 1.34755 0.86564 0.78483 0.79944 0.83227 1.19694 1.21035 1.20942 0.92485 0.89694 0.95983 0.95057 0.90327 0.87851 0.89823 0.87964 0.88414 0.95890 0.94984 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 8.85 60.06 0.53 0.98 16 2 N -0.55 -9.29 4.69 -234.62 -1.10 -10.39 16 3 C 0.06 0.85 5.51 -3.70 -0.02 0.83 16 4 C -0.16 -2.24 6.35 -27.37 -0.17 -2.42 16 5 C 0.36 6.23 6.80 -28.31 -0.19 6.04 16 6 O -0.47 -9.48 17.91 6.00 0.11 -9.37 16 7 C -0.15 -2.79 5.34 -27.37 -0.15 -2.94 16 8 C 0.10 1.94 1.92 -67.60 -0.13 1.81 16 9 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 10 C 0.03 0.68 4.07 -27.88 -0.11 0.57 16 11 C -0.52 -14.12 8.41 -34.44 -0.29 -14.41 16 12 H 0.06 1.50 7.30 -52.49 -0.38 1.12 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 15 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 16 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H 0.06 0.74 7.99 -51.93 -0.41 0.33 16 20 H 0.08 1.51 6.25 -51.93 -0.32 1.18 16 21 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 22 H 0.03 0.45 8.10 -51.93 -0.42 0.03 16 23 H 0.08 0.91 7.97 -51.93 -0.41 0.49 16 24 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 27 H 0.10 2.02 7.33 -51.93 -0.38 1.64 16 28 H 0.02 0.58 6.04 -51.93 -0.31 0.27 16 29 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 247.54 15.07 3.73 3.73 Total: -1.00 -29.71 247.54 -6.50 -36.21 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -4.32 Total: -3.34 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -0.63 Total: -7.97 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.36 Total: -35.56 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: 0.11 Total: -9.37 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -29.71 -6.50 -36.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238331373.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.462 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds