Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46834 * 111.00049 * 2 1 4 4 C 1.53300 * 109.40039 * 189.75041 * 3 2 1 5 5 C 1.51436 * 108.24097 * 306.20262 * 4 3 2 6 6 O 1.20759 * 121.11328 * 229.04847 * 5 4 3 7 7 C 1.51437 * 117.77716 * 49.02977 * 5 4 3 8 8 C 1.46826 * 110.99927 * 124.67798 * 2 1 3 9 9 H 1.09002 * 109.50135 * 290.23709 * 8 2 1 10 10 C 1.53004 * 109.48209 * 50.27612 * 8 2 1 11 11 C 1.50702 * 109.47458 * 185.39457 * 10 8 2 12 12 H 1.08000 * 119.99528 * 5.14063 * 11 10 8 13 13 C 1.37872 * 120.00183 * 185.14931 * 11 10 8 14 14 N 1.31515 * 120.00136 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00175 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47145 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47052 * 119.99586 * 15 13 11 18 18 H 1.48494 * 109.47305 * 239.99666 * 15 13 11 19 19 H 1.09006 * 109.47250 * 52.60322 * 1 2 3 20 20 H 1.08999 * 109.47258 * 172.59335 * 1 2 3 21 21 H 1.08998 * 109.47852 * 292.59722 * 1 2 3 22 22 H 1.09000 * 109.48366 * 69.76470 * 3 2 1 23 23 H 1.09002 * 109.47713 * 309.72749 * 3 2 1 24 24 H 1.08993 * 109.71045 * 65.89144 * 4 3 2 25 25 H 1.09005 * 109.70647 * 186.52127 * 4 3 2 26 26 H 1.08997 * 109.70886 * 70.65701 * 7 5 4 27 27 H 1.08999 * 109.71146 * 191.24239 * 7 5 4 28 28 H 1.09001 * 109.46640 * 305.39252 * 10 8 2 29 29 H 1.08995 * 109.47551 * 65.38752 * 10 8 2 30 30 H 0.96996 * 120.00592 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9951 1.3708 0.0000 4 6 3.5081 1.3355 -0.2449 5 6 4.1318 0.4064 0.7754 6 8 5.0943 0.7449 1.4214 7 6 3.5080 -0.9612 0.9589 8 6 1.9951 -0.7799 1.1273 9 1 1.7937 -0.2528 2.0599 10 6 1.3173 -2.1513 1.1595 11 6 1.7582 -2.9008 2.3903 12 1 2.3861 -2.4148 3.1224 13 6 1.3602 -4.2069 2.5816 14 7 0.5953 -4.7985 1.6902 15 14 1.9072 -5.1362 4.1069 16 1 2.7562 -4.2533 4.9465 17 1 0.7141 -5.5600 4.8828 18 1 2.6867 -6.3341 3.7037 19 1 -0.3634 0.6242 -0.8165 20 1 -0.3634 -1.0191 -0.1325 21 1 -0.3635 0.3949 0.9487 22 1 1.7936 1.8376 0.9642 23 1 1.5122 1.9455 -0.7904 24 1 3.7092 0.9656 -1.2502 25 1 3.9223 2.3374 -0.1314 26 1 3.7091 -1.5776 0.0827 27 1 3.9227 -1.4383 1.8469 28 1 0.2353 -2.0213 1.1813 29 1 1.5974 -2.7160 0.2703 30 1 0.3149 -5.7172 1.8249 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238331373.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = -63.820536 kcal Electronic energy + Delta-G solvation = -12805.693124 eV Core-core repulsion = 10599.743168 eV Total energy + Delta-G solvation = -2205.949956 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.99650 -38.78461 -35.35075 -33.11587 -32.68582 -29.18720 -26.68880 -25.71202 -23.67084 -21.46905 -20.04866 -18.62969 -17.06316 -16.59799 -16.45054 -16.11457 -15.80236 -15.60844 -14.78586 -14.21456 -14.05431 -13.47844 -13.46701 -13.12218 -12.71699 -12.58045 -12.45609 -12.37519 -12.10570 -11.76695 -11.45359 -11.18151 -10.55515 -10.32303 -9.24602 -8.20027 -6.28836 0.91454 1.38098 1.40109 1.51745 2.39469 2.96647 3.13524 3.22682 3.89145 4.02437 4.05582 4.24711 4.36549 4.59159 4.62198 4.72371 4.83439 4.87203 4.99738 5.10682 5.12243 5.21127 5.45789 5.66376 5.75122 6.02954 6.25052 6.30769 6.49648 6.86163 7.39306 8.91527 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.040923 B = 0.010704 C = 0.008889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.045145 B = 2615.316383 C = 3149.189785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.551 5.551 3 C 0.060 3.940 4 C -0.153 4.153 5 C 0.364 3.636 6 O -0.503 6.503 7 C -0.148 4.148 8 C 0.109 3.891 9 H 0.020 0.980 10 C 0.037 3.963 11 C -0.536 4.536 12 H 0.053 0.947 13 C 0.008 3.992 14 N -0.926 5.926 15 Si 0.955 3.045 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.278 1.278 19 H 0.095 0.905 20 H 0.056 0.944 21 H 0.019 0.981 22 H 0.030 0.970 23 H 0.117 0.883 24 H 0.125 0.875 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.072 0.928 28 H 0.007 0.993 29 H 0.005 0.995 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 10.815 -4.724 11.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.276 5.276 3 C -0.068 4.068 4 C -0.190 4.190 5 C 0.243 3.757 6 O -0.380 6.380 7 C -0.187 4.187 8 C 0.001 3.999 9 H 0.038 0.962 10 C 0.000 4.000 11 C -0.575 4.575 12 H 0.071 0.929 13 C -0.190 4.190 14 N -0.566 5.566 15 Si 0.780 3.220 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.204 1.204 19 H 0.113 0.887 20 H 0.075 0.925 21 H 0.038 0.962 22 H 0.048 0.952 23 H 0.135 0.865 24 H 0.143 0.857 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.026 0.974 29 H 0.024 0.976 30 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.918 10.623 -4.850 11.834 hybrid contribution -0.218 -0.693 1.597 1.755 sum 1.700 9.930 -3.253 10.587 Atomic orbital electron populations 1.22357 0.86355 1.02486 1.00605 1.61829 1.08798 1.13337 1.43591 1.22181 0.93612 0.89182 1.01811 1.22384 0.95930 1.00353 1.00351 1.25512 0.80536 0.89873 0.79778 1.90343 1.25871 1.77617 1.44156 1.22285 0.95994 0.96133 1.04243 1.21454 0.92731 0.95545 0.90180 0.96173 1.19090 0.94880 0.90347 0.95706 1.21568 1.31182 0.97927 1.06803 0.92888 1.25786 0.95176 0.98645 0.99424 1.70071 1.36662 1.13298 1.36567 0.85553 0.78219 0.78586 0.79648 1.19217 1.20361 1.20376 0.88682 0.92499 0.96210 0.95152 0.86470 0.85659 0.87221 0.87775 0.90944 0.97434 0.97622 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 8.85 127.69 1.13 2.02 16 2 N -0.55 -17.78 4.69 -896.20 -4.21 -21.98 16 3 C 0.06 1.44 5.51 86.42 0.48 1.92 16 4 C -0.15 -3.56 6.35 30.18 0.19 -3.37 16 5 C 0.36 12.11 6.80 29.57 0.20 12.31 16 6 O -0.50 -19.60 17.91 -1.45 -0.03 -19.62 16 7 C -0.15 -5.69 5.34 30.18 0.16 -5.52 16 8 C 0.11 4.41 1.92 45.03 0.09 4.50 16 9 H 0.02 0.87 8.10 -2.39 -0.02 0.85 16 10 C 0.04 1.87 4.07 29.85 0.12 1.99 16 11 C -0.54 -29.76 8.41 25.60 0.22 -29.55 16 12 H 0.05 2.91 7.30 -2.91 -0.02 2.88 16 13 C 0.01 0.46 5.46 84.65 0.46 0.92 16 14 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 15 Si 0.95 44.17 29.54 68.60 2.03 46.20 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H 0.09 2.15 7.99 -2.38 -0.02 2.13 16 20 H 0.06 2.03 6.25 -2.39 -0.01 2.02 16 21 H 0.02 0.59 8.14 -2.39 -0.02 0.58 16 22 H 0.03 0.76 8.10 -2.39 -0.02 0.74 16 23 H 0.12 2.03 7.97 -2.39 -0.02 2.01 16 24 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 26 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 27 H 0.07 3.09 7.33 -2.39 -0.02 3.07 16 28 H 0.01 0.40 6.04 -2.39 -0.01 0.38 16 29 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -64.74 247.54 2.23 -62.50 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 1.11 Total: 2.25 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: 3.04 Total: -14.78 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -3.92 Total: -76.54 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.03 Total: -19.62 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -64.74 2.23 -62.50 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238331373.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.318 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds