Wall clock time and date at job start Mon Mar 30 2020 02:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46829 * 111.00248 * 2 1 4 4 C 1.53294 * 109.39995 * 170.24540 * 3 2 1 5 5 C 1.51435 * 108.24110 * 53.79973 * 4 3 2 6 6 O 1.20757 * 121.11410 * 130.99074 * 5 4 3 7 7 C 1.51435 * 117.77695 * 310.96927 * 5 4 3 8 8 C 1.46827 * 110.99864 * 235.31365 * 2 1 3 9 9 H 1.09001 * 109.49354 * 69.77037 * 8 2 1 10 10 C 1.52992 * 109.48795 * 309.73372 * 8 2 1 11 11 C 1.50701 * 109.47593 * 176.04490 * 10 8 2 12 12 H 1.08000 * 119.99896 * 355.12515 * 11 10 8 13 13 C 1.37875 * 120.00247 * 175.13401 * 11 10 8 14 14 N 1.31514 * 119.99940 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99914 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.46914 * 269.99801 * 15 13 11 17 17 H 1.48498 * 109.47176 * 29.99984 * 15 13 11 18 18 H 1.48501 * 109.46922 * 149.99905 * 15 13 11 19 19 H 1.09002 * 109.47433 * 191.30931 * 1 2 3 20 20 H 1.09006 * 109.46845 * 311.30596 * 1 2 3 21 21 H 1.08997 * 109.47409 * 71.30890 * 1 2 3 22 22 H 1.09008 * 109.47949 * 50.27321 * 3 2 1 23 23 H 1.08997 * 109.49629 * 290.24073 * 3 2 1 24 24 H 1.08995 * 109.71148 * 294.10707 * 4 3 2 25 25 H 1.09001 * 109.74006 * 173.50315 * 4 3 2 26 26 H 1.09003 * 109.70856 * 289.34163 * 7 5 4 27 27 H 1.08996 * 109.71077 * 168.71764 * 7 5 4 28 28 H 1.09003 * 109.47445 * 56.04201 * 10 8 2 29 29 H 1.09008 * 109.46923 * 296.04292 * 10 8 2 30 30 H 0.97005 * 119.99892 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3707 0.0000 4 6 3.5081 1.3354 0.2450 5 6 4.1319 0.4063 -0.7753 6 8 5.0948 0.7445 -1.4207 7 6 3.5080 -0.9613 -0.9588 8 6 1.9951 -0.7801 -1.1271 9 1 1.7938 -0.2530 -2.0598 10 6 1.3173 -2.1513 -1.1594 11 6 1.7854 -2.9147 -2.3715 12 1 2.4335 -2.4387 -3.0924 13 6 1.3860 -4.2208 -2.5602 14 7 1.7941 -4.8868 -3.6183 15 14 0.2654 -5.0444 -1.3130 16 1 1.0884 -5.7079 -0.2703 17 1 -0.6061 -4.0222 -0.6797 18 1 -0.5772 -6.0576 -1.9978 19 1 -0.3634 -1.0077 0.2015 20 1 -0.3633 0.6784 0.7720 21 1 -0.3634 0.3293 -0.9734 22 1 1.5123 1.9455 0.7904 23 1 1.7938 1.8378 -0.9640 24 1 3.7091 0.9655 1.2504 25 1 3.9228 2.3370 0.1320 26 1 3.7091 -1.5777 -0.0826 27 1 3.9222 -1.4381 -1.8472 28 1 0.2361 -2.0212 -1.2072 29 1 1.5770 -2.7063 -0.2579 30 1 1.5129 -5.8056 -3.7512 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238331600.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:55 Heat of formation + Delta-G solvation = -40.521312 kcal Electronic energy + Delta-G solvation = -12846.379347 eV Core-core repulsion = 10641.439721 eV Total energy + Delta-G solvation = -2204.939626 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.63507 -37.41199 -33.44042 -31.63994 -31.36423 -27.89722 -25.49317 -23.77705 -22.16535 -19.78368 -18.72113 -17.00736 -15.67332 -15.19991 -14.89884 -14.53973 -14.45915 -13.87171 -13.47983 -12.85039 -12.51740 -12.32429 -11.93764 -11.66527 -11.34114 -11.12079 -10.89848 -10.78781 -10.17243 -10.09866 -9.86010 -9.22739 -8.94714 -8.57421 -7.99696 -6.08376 -4.07509 2.28204 3.28405 3.36272 3.38554 4.17528 4.40968 4.47817 5.10880 5.11298 5.23675 5.29019 5.50050 5.67782 5.75866 5.81754 5.85556 5.92065 6.03772 6.24138 6.38764 6.50173 6.74503 7.00383 7.20224 7.35338 7.48544 7.75706 7.85259 8.47022 8.95179 9.52924 11.04595 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041455 B = 0.011397 C = 0.009484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.267065 B = 2456.162127 C = 2951.492686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.549 5.549 3 C 0.062 3.938 4 C -0.165 4.165 5 C 0.358 3.642 6 O -0.470 6.470 7 C -0.148 4.148 8 C 0.105 3.895 9 H 0.041 0.959 10 C -0.006 4.006 11 C -0.523 4.523 12 H 0.073 0.927 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.880 3.120 16 H -0.276 1.276 17 H -0.266 1.266 18 H -0.289 1.289 19 H 0.077 0.923 20 H 0.058 0.942 21 H 0.026 0.974 22 H 0.079 0.921 23 H 0.033 0.967 24 H 0.103 0.897 25 H 0.084 0.916 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.795 9.850 9.082 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.067 4.067 4 C -0.203 4.203 5 C 0.235 3.765 6 O -0.345 6.345 7 C -0.186 4.186 8 C -0.002 4.002 9 H 0.058 0.942 10 C -0.043 4.043 11 C -0.561 4.561 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.191 1.191 18 H -0.215 1.215 19 H 0.096 0.904 20 H 0.077 0.923 21 H 0.044 0.956 22 H 0.098 0.902 23 H 0.052 0.948 24 H 0.121 0.879 25 H 0.103 0.897 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.040 0.960 29 H 0.042 0.958 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.148 9.635 9.067 13.280 hybrid contribution -0.923 -0.217 -0.115 0.955 sum -2.071 9.418 8.953 13.158 Atomic orbital electron populations 1.22342 0.87156 1.02808 0.99671 1.61886 1.07989 1.11796 1.45697 1.21998 0.93440 0.90724 1.00526 1.22383 0.96552 1.00337 1.01073 1.25261 0.81409 0.90318 0.79534 1.90358 1.24363 1.77257 1.42506 1.22363 0.96155 0.94470 1.05572 1.21612 0.92603 0.96374 0.89660 0.94152 1.19722 0.95829 0.90861 0.97926 1.21055 1.31128 0.97244 1.06704 0.90864 1.24991 0.95766 0.97196 0.95287 1.69912 1.45245 1.10920 1.27780 0.86779 0.81313 0.79467 0.81706 1.20193 1.19060 1.21474 0.90450 0.92283 0.95550 0.90235 0.94833 0.87869 0.89703 0.88045 0.87865 0.95986 0.95762 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.74 60.06 0.53 0.94 16 2 N -0.55 -8.78 4.69 -234.63 -1.10 -9.88 16 3 C 0.06 0.81 5.50 -3.71 -0.02 0.79 16 4 C -0.17 -2.16 6.35 -27.37 -0.17 -2.33 16 5 C 0.36 6.12 6.80 -28.31 -0.19 5.93 16 6 O -0.47 -9.39 17.91 6.00 0.11 -9.28 16 7 C -0.15 -2.76 5.31 -27.37 -0.15 -2.91 16 8 C 0.10 2.03 1.92 -67.60 -0.13 1.90 16 9 H 0.04 0.83 8.10 -51.93 -0.42 0.41 16 10 C -0.01 -0.13 3.11 -27.89 -0.09 -0.22 16 11 C -0.52 -14.30 8.95 -34.44 -0.31 -14.61 16 12 H 0.07 2.17 7.44 -52.49 -0.39 1.78 16 13 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 14 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 15 Si 0.88 21.15 27.38 -169.99 -4.65 16.50 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -6.08 6.68 56.52 0.38 -5.70 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 20 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 21 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 22 H 0.08 0.85 7.92 -51.92 -0.41 0.44 16 23 H 0.03 0.46 8.10 -51.93 -0.42 0.04 16 24 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 27 H 0.10 2.18 7.22 -51.93 -0.38 1.80 16 28 H 0.02 0.50 5.61 -51.93 -0.29 0.21 16 29 H 0.02 0.55 7.30 -51.92 -0.38 0.17 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 243.99 15.07 3.68 3.68 Total: -1.00 -30.55 243.99 -6.11 -36.66 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.29 Total: -2.54 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -0.63 Total: -8.64 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.33 Total: -36.37 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.11 Total: -9.28 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.65 Total: 16.50 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -30.55 -6.11 -36.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238331600.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.858 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds