Wall clock time and date at job start Mon Mar 30 2020 02:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46829 * 111.00248 * 2 1 4 4 C 1.53294 * 109.39995 * 170.24540 * 3 2 1 5 5 C 1.51435 * 108.24110 * 53.79973 * 4 3 2 6 6 O 1.20757 * 121.11410 * 130.99074 * 5 4 3 7 7 C 1.51435 * 117.77695 * 310.96927 * 5 4 3 8 8 C 1.46827 * 110.99864 * 235.31365 * 2 1 3 9 9 H 1.09001 * 109.49354 * 69.77037 * 8 2 1 10 10 C 1.52992 * 109.48795 * 309.73372 * 8 2 1 11 11 C 1.50701 * 109.47593 * 176.04490 * 10 8 2 12 12 H 1.08000 * 119.99896 * 355.12515 * 11 10 8 13 13 C 1.37875 * 120.00247 * 175.13401 * 11 10 8 14 14 N 1.31514 * 119.99940 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99914 * 359.97438 * 13 11 10 16 16 H 1.48491 * 109.46914 * 269.99801 * 15 13 11 17 17 H 1.48498 * 109.47176 * 29.99984 * 15 13 11 18 18 H 1.48501 * 109.46922 * 149.99905 * 15 13 11 19 19 H 1.09002 * 109.47433 * 191.30931 * 1 2 3 20 20 H 1.09006 * 109.46845 * 311.30596 * 1 2 3 21 21 H 1.08997 * 109.47409 * 71.30890 * 1 2 3 22 22 H 1.09008 * 109.47949 * 50.27321 * 3 2 1 23 23 H 1.08997 * 109.49629 * 290.24073 * 3 2 1 24 24 H 1.08995 * 109.71148 * 294.10707 * 4 3 2 25 25 H 1.09001 * 109.74006 * 173.50315 * 4 3 2 26 26 H 1.09003 * 109.70856 * 289.34163 * 7 5 4 27 27 H 1.08996 * 109.71077 * 168.71764 * 7 5 4 28 28 H 1.09003 * 109.47445 * 56.04201 * 10 8 2 29 29 H 1.09008 * 109.46923 * 296.04292 * 10 8 2 30 30 H 0.97005 * 119.99892 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3707 0.0000 4 6 3.5081 1.3354 0.2450 5 6 4.1319 0.4063 -0.7753 6 8 5.0948 0.7445 -1.4207 7 6 3.5080 -0.9613 -0.9588 8 6 1.9951 -0.7801 -1.1271 9 1 1.7938 -0.2530 -2.0598 10 6 1.3173 -2.1513 -1.1594 11 6 1.7854 -2.9147 -2.3715 12 1 2.4335 -2.4387 -3.0924 13 6 1.3860 -4.2208 -2.5602 14 7 1.7941 -4.8868 -3.6183 15 14 0.2654 -5.0444 -1.3130 16 1 1.0884 -5.7079 -0.2703 17 1 -0.6061 -4.0222 -0.6797 18 1 -0.5772 -6.0576 -1.9978 19 1 -0.3634 -1.0077 0.2015 20 1 -0.3633 0.6784 0.7720 21 1 -0.3634 0.3293 -0.9734 22 1 1.5123 1.9455 0.7904 23 1 1.7938 1.8378 -0.9640 24 1 3.7091 0.9655 1.2504 25 1 3.9228 2.3370 0.1320 26 1 3.7091 -1.5777 -0.0826 27 1 3.9222 -1.4381 -1.8472 28 1 0.2361 -2.0212 -1.2072 29 1 1.5770 -2.7063 -0.2579 30 1 1.5129 -5.8056 -3.7512 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238331600.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:54 Heat of formation + Delta-G solvation = -62.506311 kcal Electronic energy + Delta-G solvation = -12847.332688 eV Core-core repulsion = 10641.439721 eV Total energy + Delta-G solvation = -2205.892967 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.02699 -38.83037 -35.31180 -33.33758 -32.70769 -29.66764 -26.70412 -25.47273 -23.56722 -21.40422 -20.07801 -19.05664 -17.03861 -16.64020 -16.47669 -16.01297 -15.82365 -15.52318 -14.87860 -14.63191 -14.15165 -13.56641 -13.50176 -13.21522 -12.66283 -12.49499 -12.44494 -12.20977 -11.88801 -11.78638 -11.69211 -11.26604 -10.74412 -10.37523 -9.28575 -8.27643 -6.32226 0.90598 1.39120 1.40068 1.52110 2.37712 2.91314 3.07496 3.19894 3.86473 3.98198 4.02817 4.21544 4.35692 4.55378 4.58205 4.72987 4.81423 4.84842 4.94708 5.08972 5.09487 5.17153 5.21544 5.44474 5.60901 6.03582 6.18754 6.30117 6.48684 6.75299 7.31923 8.89091 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041455 B = 0.011397 C = 0.009484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.267065 B = 2456.162127 C = 2951.492686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.060 3.940 4 C -0.151 4.151 5 C 0.361 3.639 6 O -0.506 6.506 7 C -0.151 4.151 8 C 0.115 3.885 9 H 0.018 0.982 10 C 0.001 3.999 11 C -0.528 4.528 12 H 0.028 0.972 13 C 0.005 3.995 14 N -0.952 5.952 15 Si 0.952 3.048 16 H -0.267 1.267 17 H -0.241 1.241 18 H -0.288 1.288 19 H 0.064 0.936 20 H 0.097 0.903 21 H 0.020 0.980 22 H 0.121 0.879 23 H 0.029 0.971 24 H 0.129 0.871 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.257 11.280 12.146 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.068 4.068 4 C -0.189 4.189 5 C 0.241 3.759 6 O -0.383 6.383 7 C -0.189 4.189 8 C 0.006 3.994 9 H 0.036 0.964 10 C -0.037 4.037 11 C -0.566 4.566 12 H 0.046 0.954 13 C -0.192 4.192 14 N -0.593 5.593 15 Si 0.775 3.225 16 H -0.192 1.192 17 H -0.164 1.164 18 H -0.214 1.214 19 H 0.083 0.917 20 H 0.116 0.884 21 H 0.038 0.962 22 H 0.139 0.861 23 H 0.047 0.953 24 H 0.147 0.853 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.621 11.094 12.152 16.662 hybrid contribution -0.424 -0.619 -1.136 1.362 sum -3.045 10.475 11.015 15.503 Atomic orbital electron populations 1.22436 0.86020 1.03132 1.00708 1.61865 1.09025 1.13335 1.43009 1.22190 0.93499 0.89186 1.01893 1.22386 0.96020 1.00196 1.00304 1.25586 0.80577 0.89925 0.79850 1.90352 1.26064 1.77626 1.44257 1.22302 0.96174 0.96284 1.04152 1.21278 0.92551 0.95151 0.90405 0.96427 1.19607 0.96314 0.92240 0.95542 1.21359 1.29973 0.97725 1.07546 0.95360 1.26004 0.97671 0.98016 0.97510 1.70082 1.47374 1.11491 1.30367 0.85633 0.79308 0.78646 0.78900 1.19167 1.16417 1.21421 0.91697 0.88424 0.96180 0.86051 0.95318 0.85287 0.87392 0.87000 0.91955 0.95188 0.95114 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 8.74 127.69 1.12 1.74 16 2 N -0.55 -15.80 4.69 -896.24 -4.20 -20.01 16 3 C 0.06 1.32 5.50 86.42 0.48 1.80 16 4 C -0.15 -3.36 6.35 30.18 0.19 -3.17 16 5 C 0.36 12.05 6.80 29.57 0.20 12.25 16 6 O -0.51 -20.31 17.91 -1.44 -0.03 -20.33 16 7 C -0.15 -5.74 5.31 30.18 0.16 -5.58 16 8 C 0.11 4.39 1.92 45.03 0.09 4.48 16 9 H 0.02 0.75 8.10 -2.39 -0.02 0.73 16 10 C 0.00 0.03 3.11 29.85 0.09 0.12 16 11 C -0.53 -29.91 8.95 25.60 0.23 -29.68 16 12 H 0.03 1.80 7.44 -2.91 -0.02 1.78 16 13 C 0.00 0.27 5.47 84.65 0.46 0.73 16 14 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 15 Si 0.95 43.34 27.38 68.60 1.88 45.22 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.24 -9.92 6.68 99.48 0.66 -9.26 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 19 H 0.06 1.83 6.54 -2.39 -0.02 1.81 16 20 H 0.10 1.77 7.91 -2.38 -0.02 1.75 16 21 H 0.02 0.53 8.12 -2.39 -0.02 0.51 16 22 H 0.12 1.80 7.92 -2.38 -0.02 1.78 16 23 H 0.03 0.68 8.10 -2.39 -0.02 0.66 16 24 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 27 H 0.06 2.84 7.22 -2.39 -0.02 2.82 16 28 H 0.03 1.31 5.61 -2.39 -0.01 1.29 16 29 H 0.03 1.34 7.30 -2.38 -0.02 1.33 16 30 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -69.09 243.99 2.03 -67.05 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.07 Total: 4.92 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: 3.02 Total: -17.31 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.91 Total: -79.56 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.03 Total: -20.33 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -69.09 2.03 -67.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238331600.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.548 kcal (2) G-P(sol) polarization free energy of solvation -69.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds