Wall clock time and date at job start Mon Mar 30 2020 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.73914 * 2 1 4 4 C 1.53297 * 109.71186 * 120.61479 * 2 1 3 5 5 N 1.46831 * 109.41182 * 173.48722 * 4 2 1 6 6 C 1.46894 * 110.99921 * 170.24089 * 5 4 2 7 7 C 1.46826 * 111.56394 * 294.60327 * 5 4 2 8 8 C 1.53302 * 109.39993 * 65.38784 * 7 5 4 9 9 H 1.09002 * 109.70859 * 65.89128 * 8 7 5 10 10 C 1.50699 * 109.71026 * 186.51876 * 8 7 5 11 11 H 1.07997 * 120.00158 * 359.97438 * 10 8 7 12 12 C 1.37877 * 120.00365 * 179.97438 * 10 8 7 13 13 N 1.31520 * 119.99448 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00512 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46522 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46928 * 119.99959 * 14 12 10 17 17 H 1.48497 * 109.46820 * 240.00024 * 14 12 10 18 18 C 1.51437 * 108.24164 * 306.20419 * 8 7 5 19 19 O 1.20758 * 121.11363 * 229.04610 * 18 8 7 20 20 H 1.09004 * 109.47089 * 299.38343 * 1 2 3 21 21 H 1.08995 * 109.47710 * 59.38608 * 1 2 3 22 22 H 1.09005 * 109.47301 * 179.39004 * 1 2 3 23 23 H 1.09002 * 109.48492 * 53.49919 * 4 2 1 24 24 H 1.08999 * 109.48002 * 293.47142 * 4 2 1 25 25 H 1.08994 * 109.47619 * 59.99709 * 6 5 4 26 26 H 1.09001 * 109.47048 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47002 * 299.99405 * 6 5 4 28 28 H 1.08994 * 109.48266 * 185.36320 * 7 5 4 29 29 H 1.09004 * 109.48622 * 305.39465 * 7 5 4 30 30 H 0.97003 * 119.99742 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0470 -0.7349 1.2420 5 7 3.5069 -0.8677 1.1580 6 6 4.0649 -1.3560 2.4260 7 6 3.9068 -1.7314 0.0400 8 6 3.5162 -1.0643 -1.2839 9 1 4.0974 -0.1525 -1.4215 10 6 3.7768 -2.0115 -2.4266 11 1 4.1816 -2.9937 -2.2324 12 6 3.4984 -1.6242 -3.7203 13 7 3.0050 -0.4283 -3.9568 14 14 3.8208 -2.7985 -5.1368 15 1 4.3727 -4.0718 -4.6082 16 1 2.5492 -3.0695 -5.8542 17 1 4.7973 -2.1874 -6.0739 18 6 2.0412 -0.7260 -1.2272 19 8 1.2972 -1.0254 -2.1300 20 1 -0.3633 0.5042 0.8955 21 1 -0.3634 0.5233 -0.8844 22 1 -0.3634 -1.0276 -0.0109 23 1 1.5942 -1.7251 1.2933 24 1 1.7843 -0.1683 2.1353 25 1 3.6381 -2.3314 2.6593 26 1 5.1476 -1.4448 2.3363 27 1 3.8233 -0.6535 3.2237 28 1 4.9857 -1.8835 0.0659 29 1 3.4018 -2.6937 0.1252 30 1 2.8088 -0.1559 -4.8669 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238461254.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:18 Heat of formation + Delta-G solvation = -36.520585 kcal Electronic energy + Delta-G solvation = -13142.325016 eV Core-core repulsion = 10937.558874 eV Total energy + Delta-G solvation = -2204.766142 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.93144 -36.29921 -33.25270 -32.22559 -30.22067 -26.57077 -25.31025 -24.01437 -21.34086 -20.77668 -17.85966 -16.34451 -15.16613 -14.81520 -14.55762 -14.36565 -13.84076 -13.47648 -12.79251 -12.23951 -12.12119 -11.92753 -11.59708 -11.32881 -11.16452 -10.93727 -10.71456 -10.50617 -10.41056 -10.26588 -9.51895 -9.18875 -8.34660 -7.82034 -7.71985 -5.96101 -3.99489 3.36034 3.43670 3.46355 3.69252 4.39668 4.55593 5.14929 5.42326 5.50516 5.55767 5.71998 5.79929 5.83388 5.97768 6.07720 6.10032 6.19944 6.29813 6.40708 6.58945 6.68610 6.76917 7.30612 7.41870 7.57007 7.68162 7.96849 8.31513 8.96304 9.35321 9.66799 11.15506 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.013192 C = 0.010717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.679999 B = 2122.056950 C = 2611.978464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.150 4.150 3 H 0.095 0.905 4 C 0.075 3.925 5 N -0.551 5.551 6 C 0.028 3.972 7 C 0.071 3.929 8 C 0.014 3.986 9 H 0.063 0.937 10 C -0.530 4.530 11 H 0.058 0.942 12 C 0.081 3.919 13 N -0.869 5.869 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.360 3.640 19 O -0.423 6.423 20 H 0.048 0.952 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.018 0.982 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.025 0.975 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.691 0.087 9.986 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.169 4.169 3 H 0.113 0.887 4 C -0.053 4.053 5 N -0.275 5.275 6 C -0.120 4.120 7 C -0.056 4.056 8 C -0.006 4.006 9 H 0.081 0.919 10 C -0.568 4.568 11 H 0.076 0.924 12 C -0.124 4.124 13 N -0.505 5.505 14 Si 0.722 3.278 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.211 1.211 18 C 0.231 3.769 19 O -0.292 6.292 20 H 0.067 0.933 21 H 0.080 0.920 22 H 0.070 0.930 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.968 0.497 9.260 9.323 hybrid contribution -0.172 -1.237 -0.542 1.361 sum -1.140 -0.740 8.718 8.823 Atomic orbital electron populations 1.21553 0.94580 1.01746 1.01094 1.22127 0.95952 1.01793 0.97060 0.88706 1.21967 0.87560 0.98499 0.97266 1.61831 1.10059 1.51669 1.03926 1.22297 1.00150 0.97725 0.91842 1.22246 0.99909 0.93228 0.90180 1.19406 0.91557 0.98221 0.91371 0.91898 1.20755 1.45142 1.00498 0.90384 0.92368 1.24851 0.93831 0.94969 0.98726 1.69933 1.41604 1.18614 1.20344 0.86519 0.77714 0.81183 0.82408 1.19827 1.21015 1.21092 1.25286 0.92644 0.75125 0.83882 1.90217 1.59654 1.42521 1.36783 0.93331 0.92050 0.92997 0.95236 0.91281 0.96319 0.91575 0.92058 0.91148 0.95622 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.63 37.16 0.32 -1.95 16 2 C -0.15 -2.90 3.17 -91.24 -0.29 -3.19 16 3 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 4 C 0.08 1.28 4.80 -3.71 -0.02 1.26 16 5 N -0.55 -9.80 4.83 -242.66 -1.17 -10.97 16 6 C 0.03 0.39 9.57 60.06 0.57 0.97 16 7 C 0.07 1.48 4.75 -3.71 -0.02 1.46 16 8 C 0.01 0.34 2.54 -92.41 -0.23 0.11 16 9 H 0.06 1.71 8.14 -51.93 -0.42 1.28 16 10 C -0.53 -14.92 8.31 -34.44 -0.29 -15.21 16 11 H 0.06 1.60 7.75 -52.49 -0.41 1.20 16 12 C 0.08 2.35 4.76 -17.82 -0.08 2.27 16 13 N -0.87 -26.19 11.45 55.43 0.63 -25.55 16 14 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 15 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 C 0.36 8.96 6.05 -28.29 -0.17 8.79 16 19 O -0.42 -12.06 13.99 6.00 0.08 -11.98 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 22 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 23 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 24 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 25 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 27 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 28 H 0.07 1.38 8.01 -51.93 -0.42 0.97 16 29 H 0.03 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 246.97 15.07 3.72 3.72 Total: -1.00 -31.25 246.97 -6.55 -37.79 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -4.59 Total: -4.74 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.21 Total: -5.49 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.54 Total: -36.52 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.25 -6.55 -37.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238461254.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.273 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds