Wall clock time and date at job start Mon Mar 30 2020 02:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.73914 * 2 1 4 4 C 1.53297 * 109.71186 * 120.61479 * 2 1 3 5 5 N 1.46831 * 109.41182 * 173.48722 * 4 2 1 6 6 C 1.46894 * 110.99921 * 170.24089 * 5 4 2 7 7 C 1.46826 * 111.56394 * 294.60327 * 5 4 2 8 8 C 1.53302 * 109.39993 * 65.38784 * 7 5 4 9 9 H 1.09002 * 109.70859 * 65.89128 * 8 7 5 10 10 C 1.50699 * 109.71026 * 186.51876 * 8 7 5 11 11 H 1.07997 * 120.00158 * 359.97438 * 10 8 7 12 12 C 1.37877 * 120.00365 * 179.97438 * 10 8 7 13 13 N 1.31520 * 119.99448 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 120.00512 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46522 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.46928 * 119.99959 * 14 12 10 17 17 H 1.48497 * 109.46820 * 240.00024 * 14 12 10 18 18 C 1.51437 * 108.24164 * 306.20419 * 8 7 5 19 19 O 1.20758 * 121.11363 * 229.04610 * 18 8 7 20 20 H 1.09004 * 109.47089 * 299.38343 * 1 2 3 21 21 H 1.08995 * 109.47710 * 59.38608 * 1 2 3 22 22 H 1.09005 * 109.47301 * 179.39004 * 1 2 3 23 23 H 1.09002 * 109.48492 * 53.49919 * 4 2 1 24 24 H 1.08999 * 109.48002 * 293.47142 * 4 2 1 25 25 H 1.08994 * 109.47619 * 59.99709 * 6 5 4 26 26 H 1.09001 * 109.47048 * 180.02562 * 6 5 4 27 27 H 1.09002 * 109.47002 * 299.99405 * 6 5 4 28 28 H 1.08994 * 109.48266 * 185.36320 * 7 5 4 29 29 H 1.09004 * 109.48622 * 305.39465 * 7 5 4 30 30 H 0.97003 * 119.99742 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8981 1.0260 0.0000 4 6 2.0470 -0.7349 1.2420 5 7 3.5069 -0.8677 1.1580 6 6 4.0649 -1.3560 2.4260 7 6 3.9068 -1.7314 0.0400 8 6 3.5162 -1.0643 -1.2839 9 1 4.0974 -0.1525 -1.4215 10 6 3.7768 -2.0115 -2.4266 11 1 4.1816 -2.9937 -2.2324 12 6 3.4984 -1.6242 -3.7203 13 7 3.0050 -0.4283 -3.9568 14 14 3.8208 -2.7985 -5.1368 15 1 4.3727 -4.0718 -4.6082 16 1 2.5492 -3.0695 -5.8542 17 1 4.7973 -2.1874 -6.0739 18 6 2.0412 -0.7260 -1.2272 19 8 1.2972 -1.0254 -2.1300 20 1 -0.3633 0.5042 0.8955 21 1 -0.3634 0.5233 -0.8844 22 1 -0.3634 -1.0276 -0.0109 23 1 1.5942 -1.7251 1.2933 24 1 1.7843 -0.1683 2.1353 25 1 3.6381 -2.3314 2.6593 26 1 5.1476 -1.4448 2.3363 27 1 3.8233 -0.6535 3.2237 28 1 4.9857 -1.8835 0.0659 29 1 3.4018 -2.6937 0.1252 30 1 2.8088 -0.1559 -4.8669 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238461254.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:18 Heat of formation + Delta-G solvation = -58.327669 kcal Electronic energy + Delta-G solvation = -13143.270642 eV Core-core repulsion = 10937.558874 eV Total energy + Delta-G solvation = -2205.711768 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.67272 -37.99205 -35.20429 -33.88402 -32.11048 -27.88703 -27.12855 -25.72561 -22.97045 -22.40551 -19.61844 -18.46204 -16.89956 -16.44687 -16.27825 -16.13404 -15.37934 -15.15748 -14.59666 -14.00239 -13.59364 -13.27572 -13.08823 -12.97815 -12.85667 -12.69543 -12.56664 -12.33574 -11.99509 -11.78871 -11.49744 -11.17927 -10.54423 -9.63357 -9.20629 -8.15072 -6.23719 1.36729 1.39412 1.49825 1.76746 2.41779 3.07500 3.19116 3.67493 4.04137 4.16657 4.31101 4.41903 4.51187 4.63293 4.70424 4.80520 4.83621 4.86193 5.06498 5.09707 5.15787 5.29818 5.42501 5.56745 5.73378 6.04076 6.22952 6.31368 6.79337 7.41729 7.46824 8.96111 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.013192 C = 0.010717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.679999 B = 2122.056950 C = 2611.978464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.142 4.142 3 H 0.101 0.899 4 C 0.079 3.921 5 N -0.561 5.561 6 C 0.028 3.972 7 C 0.086 3.914 8 C 0.000 4.000 9 H 0.037 0.963 10 C -0.546 4.546 11 H 0.057 0.943 12 C 0.027 3.973 13 N -0.902 5.902 14 Si 0.954 3.046 15 H -0.262 1.262 16 H -0.290 1.290 17 H -0.274 1.274 18 C 0.349 3.651 19 O -0.470 6.470 20 H 0.092 0.908 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.028 0.972 24 H 0.111 0.889 25 H 0.026 0.974 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.018 0.982 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.648 -0.129 12.019 12.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 H 0.119 0.881 4 C -0.049 4.049 5 N -0.285 5.285 6 C -0.120 4.120 7 C -0.042 4.042 8 C -0.019 4.019 9 H 0.055 0.945 10 C -0.584 4.584 11 H 0.075 0.925 12 C -0.174 4.174 13 N -0.539 5.539 14 Si 0.780 3.220 15 H -0.186 1.186 16 H -0.216 1.216 17 H -0.200 1.200 18 C 0.224 3.776 19 O -0.342 6.342 20 H 0.111 0.889 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.129 0.871 25 H 0.045 0.955 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.036 0.964 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.900 0.278 11.332 11.371 hybrid contribution -0.150 -1.148 -1.115 1.608 sum -1.050 -0.870 10.217 10.307 Atomic orbital electron populations 1.21517 0.92785 1.01657 1.02331 1.22069 0.97516 1.01382 0.95233 0.88120 1.22038 0.86924 0.98720 0.97232 1.61772 1.10820 1.51171 1.04723 1.22411 1.00463 0.98829 0.90265 1.21936 1.00149 0.92701 0.89384 1.19431 0.92274 0.96931 0.93289 0.94530 1.21180 1.44542 1.00909 0.91757 0.92514 1.25673 0.93814 0.96488 1.01438 1.70059 1.43027 1.20350 1.20500 0.85569 0.77396 0.79653 0.79379 1.18600 1.21607 1.19979 1.25788 0.92261 0.74487 0.85081 1.90187 1.60521 1.44619 1.38914 0.88930 0.93978 0.93706 0.95348 0.87057 0.95508 0.90922 0.89290 0.90528 0.96401 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 8.63 71.98 0.62 -3.44 16 2 C -0.14 -5.30 3.17 -11.19 -0.04 -5.33 16 3 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 4 C 0.08 2.40 4.80 86.42 0.42 2.82 16 5 N -0.56 -18.46 4.83 -921.63 -4.45 -22.91 16 6 C 0.03 0.66 9.57 127.69 1.22 1.88 16 7 C 0.09 3.50 4.75 86.42 0.41 3.91 16 8 C 0.00 0.00 2.54 -11.95 -0.03 -0.03 16 9 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 10 C -0.55 -31.40 8.31 25.60 0.21 -31.18 16 11 H 0.06 3.17 7.75 -2.91 -0.02 3.15 16 12 C 0.03 1.61 4.76 84.65 0.40 2.01 16 13 N -0.90 -56.04 11.45 21.45 0.25 -55.80 16 14 Si 0.95 46.40 29.54 68.60 2.03 48.43 16 15 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 16 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 18 C 0.35 17.65 6.05 29.58 0.18 17.83 16 19 O -0.47 -27.61 13.99 -1.44 -0.02 -27.63 16 20 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 21 H 0.04 1.51 8.06 -2.39 -0.02 1.49 16 22 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 23 H 0.03 0.89 8.10 -2.39 -0.02 0.87 16 24 H 0.11 2.54 8.07 -2.39 -0.02 2.52 16 25 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.07 1.64 8.04 -2.39 -0.02 1.62 16 27 H 0.09 1.67 8.12 -2.39 -0.02 1.65 16 28 H 0.08 2.95 8.01 -2.39 -0.02 2.93 16 29 H 0.02 0.74 8.10 -2.39 -0.02 0.72 16 30 H 0.26 15.32 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -69.30 246.97 2.29 -67.01 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 1.10 Total: 2.43 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 3.40 Total: -11.53 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -4.20 Total: -78.70 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.02 Total: -27.63 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -69.30 2.29 -67.01 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238461254.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.682 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds