Wall clock time and date at job start Mon Mar 30 2020 02:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 120.00395 * 2 1 4 4 O 1.21275 * 119.99937 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99520 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.46969 * 179.97438 * 5 3 2 7 7 H 1.08004 * 119.99765 * 0.02562 * 6 5 3 8 8 C 1.37873 * 120.00234 * 180.02562 * 6 5 3 9 9 N 1.31519 * 119.99726 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00341 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47337 * 89.99619 * 10 8 6 12 12 H 1.48501 * 109.47236 * 210.00036 * 10 8 6 13 13 H 1.48500 * 109.47063 * 329.99542 * 10 8 6 14 14 C 1.46508 * 119.99823 * 179.97438 * 2 1 3 15 15 C 1.53779 * 113.61245 * 60.00172 * 14 2 1 16 16 C 1.53787 * 87.07963 * 219.93163 * 15 14 2 17 17 C 1.53779 * 113.69115 * 322.46366 * 14 2 1 18 18 H 1.08996 * 109.47118 * 269.99830 * 1 2 3 19 19 H 1.09001 * 109.46788 * 30.00123 * 1 2 3 20 20 H 1.09002 * 109.46803 * 150.00054 * 1 2 3 21 21 H 1.08996 * 109.47293 * 299.99655 * 5 3 2 22 22 H 1.09003 * 109.46879 * 60.00400 * 5 3 2 23 23 H 0.97000 * 119.99787 * 180.02562 * 9 8 6 24 24 H 1.09006 * 112.85122 * 191.19534 * 14 2 1 25 25 H 1.08997 * 113.61646 * 105.38794 * 15 14 2 26 26 H 1.08998 * 113.69354 * 334.49102 * 15 14 2 27 27 H 1.09004 * 113.61202 * 139.98084 * 16 15 14 28 28 H 1.08994 * 113.61447 * 270.88515 * 16 15 14 29 29 H 1.09002 * 113.61557 * 25.44454 * 17 14 2 30 30 H 1.09004 * 113.61501 * 254.53874 * 17 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3648 3.6177 0.0002 7 1 3.4266 3.4203 0.0006 8 6 1.9053 4.9176 0.0004 9 7 0.6122 5.1579 -0.0006 10 14 3.1191 6.3374 0.0006 11 1 3.4409 6.7138 -1.3994 12 1 2.5192 7.5015 0.7008 13 1 4.3623 5.9257 0.7007 14 6 2.1975 -1.2688 0.0006 15 6 1.8953 -2.1550 -1.2193 16 6 1.9151 -3.3530 -0.2552 17 6 1.5394 -2.3618 0.8590 18 1 -0.3633 0.0000 1.0276 19 1 -0.3633 0.8900 -0.5139 20 1 -0.3633 -0.8900 -0.5138 21 1 0.7592 2.5298 -0.8908 22 1 0.7585 2.5302 0.8892 23 1 0.2889 6.0725 -0.0009 24 1 3.2625 -1.1427 0.1955 25 1 2.6991 -2.1737 -1.9553 26 1 0.9180 -1.9690 -1.6645 27 1 1.1410 -4.0922 -0.4614 28 1 2.9029 -3.7965 -0.1301 29 1 0.4643 -2.2314 0.9831 30 1 2.0558 -2.5474 1.8009 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258607895.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:43 Heat of formation + Delta-G solvation = -22.747104 kcal Electronic energy + Delta-G solvation = -12572.094780 eV Core-core repulsion = 10367.925901 eV Total energy + Delta-G solvation = -2204.168879 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.65017 -37.46741 -33.77853 -32.88141 -28.92532 -26.66556 -25.53131 -24.88154 -22.92493 -19.34861 -18.51127 -16.67718 -15.88452 -15.73882 -14.91222 -14.69300 -14.37172 -13.12845 -12.74343 -12.43373 -12.30172 -12.08355 -11.97396 -11.72347 -11.17811 -11.15598 -10.72871 -10.62999 -10.38276 -10.27359 -9.90921 -9.20059 -8.55445 -8.41089 -7.99931 -6.03527 -4.02744 3.36549 3.41500 3.48670 3.69124 3.72376 4.50381 4.68326 4.74119 4.97444 5.08541 5.34472 5.48096 5.68887 5.72863 5.78485 5.87400 5.90598 6.05390 6.07288 6.11890 6.28018 6.55156 7.11421 7.27287 7.36391 7.98664 8.02355 8.41508 9.07985 9.24768 9.62200 11.08948 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.076406 B = 0.007948 C = 0.007477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.376897 B = 3522.011321 C = 3743.986071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.624 5.624 3 C 0.515 3.485 4 O -0.546 6.546 5 C 0.007 3.993 6 C -0.508 4.508 7 H 0.074 0.926 8 C 0.054 3.946 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.122 3.878 15 C -0.155 4.155 16 C -0.139 4.139 17 C -0.152 4.152 18 H 0.049 0.951 19 H 0.079 0.921 20 H 0.059 0.941 21 H 0.047 0.953 22 H 0.047 0.953 23 H 0.261 0.739 24 H 0.113 0.887 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.316 -13.547 -0.258 13.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.359 5.359 3 C 0.307 3.693 4 O -0.423 6.423 5 C -0.032 4.032 6 C -0.547 4.547 7 H 0.093 0.907 8 C -0.146 4.146 9 N -0.542 5.542 10 Si 0.729 3.271 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.197 1.197 14 C 0.018 3.982 15 C -0.193 4.193 16 C -0.177 4.177 17 C -0.190 4.190 18 H 0.067 0.933 19 H 0.098 0.902 20 H 0.078 0.922 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.071 0.929 24 H 0.131 0.869 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.781 -13.358 -0.249 13.478 hybrid contribution 0.343 0.742 -0.010 0.818 sum -1.439 -12.615 -0.259 12.700 Atomic orbital electron populations 1.21637 0.80300 1.02682 1.01273 1.48122 1.06467 1.05615 1.75666 1.22074 0.88533 0.85769 0.72911 1.90510 1.15022 1.87383 1.49342 1.19258 0.96753 0.87929 0.99239 1.21207 0.93969 0.89559 1.49927 0.90741 1.25006 0.95350 0.99023 0.95242 1.69961 1.12524 1.20367 1.51315 0.86430 0.81249 0.81266 0.78159 1.20613 1.21268 1.19679 1.22449 0.98130 0.82286 0.95369 1.23409 1.02331 0.95995 0.97604 1.22677 1.01691 0.96269 0.97024 1.23392 1.01503 0.96133 0.98000 0.93280 0.90215 0.92184 0.93482 0.93484 0.92939 0.86874 0.91385 0.89948 0.91360 0.90173 0.89716 0.91356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.26 8.85 59.85 0.53 1.79 16 2 N -0.62 -11.58 3.08 -173.00 -0.53 -12.11 16 3 C 0.52 12.32 7.67 -10.99 -0.08 12.24 16 4 O -0.55 -14.79 14.94 5.56 0.08 -14.71 16 5 C 0.01 0.19 4.01 -29.03 -0.12 0.07 16 6 C -0.51 -15.09 8.92 -34.44 -0.31 -15.40 16 7 H 0.07 2.31 6.75 -52.48 -0.35 1.95 16 8 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 10 Si 0.90 22.43 29.54 -169.99 -5.02 17.41 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 14 C 0.12 1.93 4.20 -67.12 -0.28 1.65 16 15 C -0.15 -1.99 7.61 -25.92 -0.20 -2.18 16 16 C -0.14 -1.46 8.08 -25.91 -0.21 -1.67 16 17 C -0.15 -1.85 7.51 -25.92 -0.19 -2.04 16 18 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 19 H 0.08 1.27 6.44 -51.93 -0.33 0.93 16 20 H 0.06 0.71 6.34 -51.93 -0.33 0.39 16 21 H 0.05 1.24 7.40 -51.93 -0.38 0.85 16 22 H 0.05 1.24 8.11 -51.93 -0.42 0.82 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.11 2.01 7.23 -51.93 -0.38 1.63 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.08 1.02 6.92 -51.93 -0.36 0.66 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.97 6.73 -51.93 -0.35 0.62 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 249.45 15.07 3.76 3.76 Total: -1.00 -32.51 249.45 -6.09 -38.60 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -4.16 Total: -2.91 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.96 Total: -4.07 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.20 Total: -38.08 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.51 -6.09 -38.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258607895.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.852 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds