Wall clock time and date at job start Mon Mar 30 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46841 * 111.00437 * 2 1 4 4 C 1.53040 * 109.52687 * 185.84362 * 3 2 1 5 5 C 1.53128 * 109.27405 * 300.81995 * 4 3 2 6 6 C 1.53119 * 109.15956 * 57.65392 * 5 4 3 7 7 H 1.09005 * 109.50445 * 62.32473 * 6 5 4 8 8 C 1.50695 * 109.50157 * 182.40207 * 6 5 4 9 9 O 1.21439 * 120.00351 * 30.00235 * 8 6 5 10 10 C 1.41027 * 120.00428 * 210.00027 * 8 6 5 11 11 H 1.08001 * 119.99807 * 6.23326 * 10 8 6 12 12 C 1.40460 * 120.00355 * 185.96063 * 10 8 6 13 13 N 1.30514 * 120.00074 * 354.03985 * 12 10 8 14 14 Si 1.86803 * 120.00037 * 174.04615 * 12 10 8 15 15 H 1.48500 * 109.47337 * 94.98066 * 14 12 10 16 16 H 1.48498 * 109.46965 * 214.98210 * 14 12 10 17 17 H 1.48501 * 109.46878 * 334.98246 * 14 12 10 18 18 C 1.46845 * 110.99946 * 124.21290 * 2 1 3 19 19 H 1.09002 * 109.47212 * 56.04548 * 1 2 3 20 20 H 1.09001 * 109.47407 * 176.04754 * 1 2 3 21 21 H 1.09002 * 109.47004 * 296.04380 * 1 2 3 22 22 H 1.09001 * 109.46313 * 65.82671 * 3 2 1 23 23 H 1.09000 * 109.46353 * 305.85792 * 3 2 1 24 24 H 1.08993 * 109.50282 * 180.88467 * 4 3 2 25 25 H 1.09001 * 109.50285 * 60.75654 * 4 3 2 26 26 H 1.09003 * 109.52293 * 297.75192 * 5 4 3 27 27 H 1.08995 * 109.51846 * 177.56075 * 5 4 3 28 28 H 0.97001 * 120.00341 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.46276 * 54.14000 * 18 2 1 30 30 H 1.08994 * 109.46669 * 294.17316 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 -0.1469 5 6 4.1189 0.5368 1.0143 6 6 3.5181 -0.8716 1.0207 7 1 3.7819 -1.3840 0.0955 8 6 4.0597 -1.6442 2.1957 9 8 4.3741 -1.0607 3.2133 10 6 4.2016 -3.0450 2.1138 11 1 4.0182 -3.5524 1.1782 12 6 4.5868 -3.7794 3.2474 13 7 4.9260 -3.1576 4.3436 14 14 4.6137 -5.6463 3.1860 15 1 5.9850 -6.1110 2.8561 16 1 4.2111 -6.1908 4.5075 17 1 3.6665 -6.1210 2.1455 18 6 1.9952 -0.7708 1.1337 19 1 -0.3634 0.5740 -0.8524 20 1 -0.3634 -1.0252 -0.0708 21 1 -0.3633 0.4512 0.9233 22 1 1.7326 1.8608 0.9376 23 1 1.5635 1.9257 -0.8329 24 1 3.9100 2.3510 -0.1310 25 1 3.7814 0.8566 -1.0907 26 1 3.8888 1.0352 1.9560 27 1 5.1998 0.4712 0.8904 28 1 5.1923 -3.6648 5.1264 29 1 1.5633 -1.7716 1.1242 30 1 1.7325 -0.2710 2.0660 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259054821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:35 Heat of formation + Delta-G solvation = -53.525751 kcal Electronic energy + Delta-G solvation = -12829.546792 eV Core-core repulsion = 10624.043251 eV Total energy + Delta-G solvation = -2205.503541 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.67509 -36.29263 -32.95351 -32.36046 -30.36900 -26.81426 -26.27287 -23.08015 -22.23521 -19.97819 -18.44425 -16.31068 -15.47647 -14.91356 -14.65051 -14.05991 -13.82335 -13.43604 -12.76509 -12.46890 -12.14225 -11.96672 -11.68121 -11.30479 -11.20921 -10.98125 -10.59224 -10.46005 -10.30352 -9.88836 -9.74624 -9.58569 -8.87188 -7.92518 -7.29091 -6.18334 -4.84379 3.06810 3.16110 3.20592 4.05786 4.18716 4.44381 5.30723 5.32474 5.44409 5.61910 5.66705 5.76684 5.87935 6.04918 6.07569 6.14248 6.24237 6.38712 6.44666 6.61117 6.62496 6.90624 7.07323 7.20668 7.31232 7.50234 7.54735 8.16054 8.87878 8.96574 10.39423 10.63853 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050466 B = 0.009979 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.699908 B = 2805.285914 C = 3102.328745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.121 4.121 7 H 0.072 0.928 8 C 0.369 3.631 9 O -0.546 6.546 10 C -0.534 4.534 11 H 0.069 0.931 12 C 0.083 3.917 13 N -0.742 5.742 14 Si 0.902 3.098 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.261 1.261 18 C 0.078 3.922 19 H 0.061 0.939 20 H 0.066 0.934 21 H 0.020 0.980 22 H 0.028 0.972 23 H 0.065 0.935 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.272 0.728 29 H 0.075 0.925 30 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 3.518 -6.864 9.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.270 5.270 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.140 4.140 6 C -0.141 4.141 7 H 0.091 0.909 8 C 0.263 3.737 9 O -0.434 6.434 10 C -0.565 4.565 11 H 0.087 0.913 12 C -0.140 4.140 13 N -0.370 5.370 14 Si 0.726 3.274 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.185 1.185 18 C -0.049 4.049 19 H 0.080 0.920 20 H 0.085 0.915 21 H 0.039 0.961 22 H 0.046 0.954 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.030 3.620 -6.633 9.077 hybrid contribution -0.349 -0.626 0.573 0.918 sum -5.380 2.993 -6.060 8.638 Atomic orbital electron populations 1.22316 0.88251 1.01913 0.99716 1.61990 1.06732 1.13467 1.44839 1.22046 0.96105 0.89355 0.99490 1.21626 0.94180 0.99629 0.99974 1.21382 0.99477 0.95756 0.97394 1.21724 0.93793 0.96264 1.02349 0.90940 1.19417 0.79262 0.89000 0.86011 1.90384 1.49292 1.71764 1.32003 1.20863 1.44324 0.94323 0.97020 0.91253 1.26030 0.92661 1.00348 0.94969 1.69962 1.28313 1.37105 1.01667 0.86435 0.79358 0.83009 0.78566 1.19572 1.20242 1.18484 1.21905 0.95588 0.97482 0.89974 0.92020 0.91500 0.96146 0.95371 0.91684 0.92351 0.91619 0.91947 0.92450 0.91742 0.90666 0.95208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.59 60.06 0.58 0.95 16 2 N -0.55 -9.46 4.91 -242.96 -1.19 -10.65 16 3 C 0.06 0.92 5.46 -3.84 -0.02 0.90 16 4 C -0.12 -1.90 6.09 -26.64 -0.16 -2.07 16 5 C -0.10 -2.11 4.92 -26.60 -0.13 -2.25 16 6 C -0.12 -2.77 2.58 -91.69 -0.24 -3.01 16 7 H 0.07 1.63 8.09 -51.93 -0.42 1.20 16 8 C 0.37 10.41 5.96 -33.25 -0.20 10.22 16 9 O -0.55 -17.40 14.68 5.42 0.08 -17.32 16 10 C -0.53 -15.00 9.19 -37.69 -0.35 -15.35 16 11 H 0.07 1.82 7.86 -52.49 -0.41 1.40 16 12 C 0.08 2.27 5.50 -17.28 -0.09 2.18 16 13 N -0.74 -21.74 11.75 55.57 0.65 -21.09 16 14 Si 0.90 19.72 29.57 -169.99 -5.03 14.70 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 18 C 0.08 1.60 4.73 -3.83 -0.02 1.59 16 19 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.06 0.87 8.09 -51.93 -0.42 0.45 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 1.39 7.78 -51.93 -0.40 0.99 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 29 H 0.07 1.56 8.12 -51.93 -0.42 1.13 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 249.57 15.07 3.76 3.76 Total: -1.00 -31.78 249.57 -6.95 -38.73 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -4.59 Total: -1.30 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -0.63 Total: -6.83 kcal Atomic # 7 Polarization: -31.20 SS G_CDS: -0.54 Total: -31.74 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.08 Total: -17.32 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -31.78 -6.95 -38.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259054821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.794 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds