Wall clock time and date at job start Mon Mar 30 2020 02:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46841 * 111.00437 * 2 1 4 4 C 1.53040 * 109.52687 * 185.84362 * 3 2 1 5 5 C 1.53128 * 109.27405 * 300.81995 * 4 3 2 6 6 C 1.53119 * 109.15956 * 57.65392 * 5 4 3 7 7 H 1.09005 * 109.50445 * 62.32473 * 6 5 4 8 8 C 1.50695 * 109.50157 * 182.40207 * 6 5 4 9 9 O 1.21439 * 120.00351 * 30.00235 * 8 6 5 10 10 C 1.41027 * 120.00428 * 210.00027 * 8 6 5 11 11 H 1.08001 * 119.99807 * 6.23326 * 10 8 6 12 12 C 1.40460 * 120.00355 * 185.96063 * 10 8 6 13 13 N 1.30514 * 120.00074 * 354.03985 * 12 10 8 14 14 Si 1.86803 * 120.00037 * 174.04615 * 12 10 8 15 15 H 1.48500 * 109.47337 * 94.98066 * 14 12 10 16 16 H 1.48498 * 109.46965 * 214.98210 * 14 12 10 17 17 H 1.48501 * 109.46878 * 334.98246 * 14 12 10 18 18 C 1.46845 * 110.99946 * 124.21290 * 2 1 3 19 19 H 1.09002 * 109.47212 * 56.04548 * 1 2 3 20 20 H 1.09001 * 109.47407 * 176.04754 * 1 2 3 21 21 H 1.09002 * 109.47004 * 296.04380 * 1 2 3 22 22 H 1.09001 * 109.46313 * 65.82671 * 3 2 1 23 23 H 1.09000 * 109.46353 * 305.85792 * 3 2 1 24 24 H 1.08993 * 109.50282 * 180.88467 * 4 3 2 25 25 H 1.09001 * 109.50285 * 60.75654 * 4 3 2 26 26 H 1.09003 * 109.52293 * 297.75192 * 5 4 3 27 27 H 1.08995 * 109.51846 * 177.56075 * 5 4 3 28 28 H 0.97001 * 120.00341 * 180.02562 * 13 12 10 29 29 H 1.09002 * 109.46276 * 54.14000 * 18 2 1 30 30 H 1.08994 * 109.46669 * 294.17316 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3708 0.0000 4 6 3.5182 1.3341 -0.1469 5 6 4.1189 0.5368 1.0143 6 6 3.5181 -0.8716 1.0207 7 1 3.7819 -1.3840 0.0955 8 6 4.0597 -1.6442 2.1957 9 8 4.3741 -1.0607 3.2133 10 6 4.2016 -3.0450 2.1138 11 1 4.0182 -3.5524 1.1782 12 6 4.5868 -3.7794 3.2474 13 7 4.9260 -3.1576 4.3436 14 14 4.6137 -5.6463 3.1860 15 1 5.9850 -6.1110 2.8561 16 1 4.2111 -6.1908 4.5075 17 1 3.6665 -6.1210 2.1455 18 6 1.9952 -0.7708 1.1337 19 1 -0.3634 0.5740 -0.8524 20 1 -0.3634 -1.0252 -0.0708 21 1 -0.3633 0.4512 0.9233 22 1 1.7326 1.8608 0.9376 23 1 1.5635 1.9257 -0.8329 24 1 3.9100 2.3510 -0.1310 25 1 3.7814 0.8566 -1.0907 26 1 3.8888 1.0352 1.9560 27 1 5.1998 0.4712 0.8904 28 1 5.1923 -3.6648 5.1264 29 1 1.5633 -1.7716 1.1242 30 1 1.7325 -0.2710 2.0660 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259054821.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:35 Heat of formation + Delta-G solvation = -75.862860 kcal Electronic energy + Delta-G solvation = -12830.515402 eV Core-core repulsion = 10624.043251 eV Total energy + Delta-G solvation = -2206.472151 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.32532 -38.25819 -34.87324 -34.11494 -32.03334 -28.92159 -27.58858 -24.80175 -23.69380 -21.69888 -20.21917 -18.43661 -17.30223 -16.56371 -16.06910 -15.55192 -15.45723 -15.16659 -14.55007 -14.19546 -13.71649 -13.60890 -13.14070 -13.13511 -12.79103 -12.62864 -12.32726 -12.12104 -12.02813 -11.61447 -11.44756 -11.22317 -10.95873 -9.47128 -9.31235 -8.28580 -7.09143 1.33660 1.36830 1.54070 2.16480 2.21287 2.99077 3.39864 3.96014 3.99063 4.03323 4.32449 4.43340 4.52363 4.58108 4.66724 4.70431 4.84452 4.91476 5.00012 5.05499 5.07524 5.14317 5.21850 5.36815 5.51907 5.99224 6.06384 6.20343 6.72522 6.83379 8.28442 8.51948 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.050466 B = 0.009979 C = 0.009023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.699908 B = 2805.285914 C = 3102.328745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.055 3.945 4 C -0.107 4.107 5 C -0.100 4.100 6 C -0.116 4.116 7 H 0.077 0.923 8 C 0.346 3.654 9 O -0.596 6.596 10 C -0.562 4.562 11 H 0.083 0.917 12 C 0.026 3.974 13 N -0.791 5.791 14 Si 0.991 3.009 15 H -0.259 1.259 16 H -0.268 1.268 17 H -0.248 1.248 18 C 0.090 3.910 19 H 0.092 0.908 20 H 0.070 0.930 21 H 0.019 0.981 22 H 0.021 0.979 23 H 0.103 0.897 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.281 0.719 29 H 0.069 0.931 30 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.347 2.885 -8.769 11.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.072 4.072 4 C -0.144 4.144 5 C -0.138 4.138 6 C -0.136 4.136 7 H 0.095 0.905 8 C 0.244 3.756 9 O -0.490 6.490 10 C -0.593 4.593 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.420 5.420 14 Si 0.810 3.190 15 H -0.183 1.183 16 H -0.192 1.192 17 H -0.171 1.171 18 C -0.038 4.038 19 H 0.110 0.890 20 H 0.089 0.911 21 H 0.038 0.962 22 H 0.039 0.961 23 H 0.121 0.879 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -6.013 3.001 -8.570 10.891 hybrid contribution -0.043 -0.390 1.169 1.234 sum -6.056 2.611 -7.401 9.913 Atomic orbital electron populations 1.22438 0.85970 1.02909 1.01024 1.61991 1.08799 1.14144 1.42368 1.22183 0.95662 0.88708 1.00695 1.21589 0.94599 1.00349 0.97903 1.21336 0.99038 0.95053 0.98339 1.21524 0.95441 0.96829 0.99763 0.90480 1.20194 0.78587 0.89970 0.86897 1.90339 1.51565 1.72745 1.34307 1.21376 1.44697 0.95009 0.98228 0.89833 1.27270 0.91223 1.06852 0.93960 1.70094 1.28905 1.40135 1.02844 0.85101 0.80080 0.74578 0.79247 1.18328 1.19214 1.17056 1.21633 0.94006 0.97707 0.90458 0.88952 0.91083 0.96192 0.96085 0.87910 0.89598 0.90632 0.94567 0.93594 0.90886 0.91268 0.97661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.59 127.69 1.22 1.84 16 2 N -0.55 -17.89 4.91 -922.60 -4.53 -22.42 16 3 C 0.06 1.59 5.46 86.33 0.47 2.06 16 4 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 5 C -0.10 -4.19 4.92 30.68 0.15 -4.03 16 6 C -0.12 -5.38 2.58 -11.49 -0.03 -5.41 16 7 H 0.08 3.46 8.09 -2.38 -0.02 3.44 16 8 C 0.35 20.28 5.96 26.37 0.16 20.43 16 9 O -0.60 -40.07 14.68 -3.52 -0.05 -40.12 16 10 C -0.56 -32.21 9.19 23.50 0.22 -32.00 16 11 H 0.08 4.38 7.86 -2.91 -0.02 4.36 16 12 C 0.03 1.43 5.50 85.43 0.47 1.90 16 13 N -0.79 -47.66 11.75 21.91 0.26 -47.40 16 14 Si 0.99 40.24 29.57 68.60 2.03 42.26 16 15 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 16 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 17 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 18 C 0.09 3.74 4.73 86.33 0.41 4.15 16 19 H 0.09 1.82 8.10 -2.39 -0.02 1.81 16 20 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 21 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 22 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.10 2.27 8.09 -2.39 -0.02 2.25 16 24 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 26 H 0.04 1.67 7.78 -2.39 -0.02 1.66 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 29 H 0.07 2.89 8.12 -2.39 -0.02 2.87 16 30 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -71.43 249.57 2.06 -69.38 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.10 Total: 12.43 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 3.26 Total: -14.13 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -4.27 Total: -69.82 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.05 Total: -40.12 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.26 kcal Total: -71.43 2.06 -69.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259054821.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.485 kcal (2) G-P(sol) polarization free energy of solvation -71.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds