Wall clock time and date at job start Mon Mar 30 2020 02:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46848 * 111.00228 * 2 1 4 4 C 1.53028 * 109.52474 * 174.15732 * 3 2 1 5 5 C 1.53117 * 109.27995 * 59.18012 * 4 3 2 6 6 C 1.53123 * 109.15747 * 302.33883 * 5 4 3 7 7 H 1.08997 * 109.50861 * 297.67624 * 6 5 4 8 8 C 1.50703 * 109.50201 * 177.59509 * 6 5 4 9 9 O 1.21439 * 120.00090 * 335.08410 * 8 6 5 10 10 C 1.41025 * 119.99961 * 155.08287 * 8 6 5 11 11 H 1.07993 * 119.99864 * 6.40636 * 10 8 6 12 12 C 1.40464 * 120.00045 * 186.40476 * 10 8 6 13 13 N 1.30519 * 119.99918 * 184.88164 * 12 10 8 14 14 Si 1.86801 * 120.00004 * 4.88071 * 12 10 8 15 15 H 1.48499 * 109.47276 * 179.97438 * 14 12 10 16 16 H 1.48507 * 109.47013 * 300.00246 * 14 12 10 17 17 H 1.48504 * 109.46812 * 59.99663 * 14 12 10 18 18 C 1.46851 * 110.99941 * 235.74181 * 2 1 3 19 19 H 1.08997 * 109.46421 * 56.05303 * 1 2 3 20 20 H 1.09006 * 109.46892 * 176.04844 * 1 2 3 21 21 H 1.08990 * 109.47391 * 296.04672 * 1 2 3 22 22 H 1.09004 * 109.46195 * 54.13778 * 3 2 1 23 23 H 1.08998 * 109.45953 * 294.17500 * 3 2 1 24 24 H 1.09001 * 109.50610 * 299.23381 * 4 3 2 25 25 H 1.09005 * 109.53791 * 179.13639 * 4 3 2 26 26 H 1.09002 * 109.52446 * 182.44284 * 5 4 3 27 27 H 1.09002 * 109.57937 * 62.27906 * 5 4 3 28 28 H 0.96999 * 119.99614 * 354.90455 * 13 12 10 29 29 H 1.09002 * 109.42634 * 65.80665 * 18 2 1 30 30 H 1.08996 * 109.49370 * 305.84095 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1189 0.5369 -1.0142 6 6 3.5183 -0.8716 -1.0206 7 1 3.7820 -1.3839 -0.0954 8 6 4.0600 -1.6442 -2.1956 9 8 4.4604 -1.0535 -3.1782 10 6 4.1019 -3.0532 -2.1541 11 1 3.6524 -3.5827 -1.3271 12 6 4.7282 -3.7680 -3.1885 13 7 4.6845 -5.0724 -3.1997 14 14 5.6236 -2.8517 -4.5479 15 1 6.1948 -3.8280 -5.5100 16 1 4.6699 -1.9593 -5.2547 17 1 6.7184 -2.0391 -3.9592 18 6 1.9953 -0.7718 -1.1331 19 1 -0.3632 0.5739 -0.8525 20 1 -0.3633 -1.0253 -0.0708 21 1 -0.3633 0.4512 0.9232 22 1 1.5634 1.9258 0.8329 23 1 1.7326 1.8608 -0.9376 24 1 3.7813 0.8568 1.0907 25 1 3.9105 2.3510 0.1314 26 1 5.1998 0.4713 -0.8903 27 1 3.8898 1.0349 -1.9564 28 1 4.2843 -5.5507 -2.4567 29 1 1.7319 -0.2723 -2.0655 30 1 1.5640 -1.7727 -1.1231 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259054825.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:37 Heat of formation + Delta-G solvation = -90.171435 kcal Electronic energy + Delta-G solvation = -12894.588258 eV Core-core repulsion = 10687.495641 eV Total energy + Delta-G solvation = -2207.092617 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.58461 -38.67932 -35.30995 -34.30132 -32.18976 -28.91493 -27.63686 -24.81801 -23.73470 -21.66338 -20.41798 -19.48612 -17.05686 -16.67435 -16.13212 -15.93787 -15.52207 -15.42130 -14.94694 -14.28904 -14.10995 -13.90797 -13.39840 -13.17183 -12.68906 -12.56313 -12.26784 -12.18326 -11.70020 -11.63378 -11.39386 -11.28809 -11.25161 -9.90852 -9.34523 -9.08632 -7.42724 1.22800 1.50788 1.91000 1.97201 2.36757 2.90181 3.14806 3.86953 3.90384 3.97740 4.22449 4.35503 4.42933 4.52242 4.59277 4.63574 4.79947 4.84450 4.96532 4.98631 5.00551 5.10848 5.28948 5.36577 5.46514 5.66292 6.00304 6.13637 6.24120 6.45300 7.75630 7.89147 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051956 B = 0.010856 C = 0.009729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.788658 B = 2578.645338 C = 2877.252170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.055 3.945 4 C -0.108 4.108 5 C -0.102 4.102 6 C -0.109 4.109 7 H 0.077 0.923 8 C 0.353 3.647 9 O -0.608 6.608 10 C -0.597 4.597 11 H 0.065 0.935 12 C 0.024 3.976 13 N -0.816 5.816 14 Si 1.163 2.837 15 H -0.307 1.307 16 H -0.295 1.295 17 H -0.291 1.291 18 C 0.087 3.913 19 H 0.026 0.974 20 H 0.065 0.935 21 H 0.091 0.909 22 H 0.100 0.900 23 H 0.027 0.973 24 H 0.071 0.929 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.284 0.716 29 H 0.017 0.983 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 9.974 6.950 13.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.073 4.073 4 C -0.146 4.146 5 C -0.140 4.140 6 C -0.129 4.129 7 H 0.096 0.904 8 C 0.257 3.743 9 O -0.508 6.508 10 C -0.628 4.628 11 H 0.084 0.916 12 C -0.195 4.195 13 N -0.442 5.442 14 Si 0.994 3.006 15 H -0.238 1.238 16 H -0.223 1.223 17 H -0.218 1.218 18 C -0.042 4.042 19 H 0.044 0.956 20 H 0.084 0.916 21 H 0.109 0.891 22 H 0.119 0.881 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.035 0.965 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.584 9.750 5.671 12.175 hybrid contribution -1.221 -0.105 0.854 1.494 sum -5.805 9.645 6.526 13.012 Atomic orbital electron populations 1.22426 0.85912 1.02222 1.01741 1.61951 1.08853 1.14437 1.42429 1.22194 0.95691 0.88419 1.00974 1.21590 0.94511 1.00599 0.97885 1.21380 0.99422 0.94201 0.98970 1.21376 0.95764 0.97169 0.98568 0.90450 1.20155 0.77657 0.89764 0.86757 1.89857 1.53244 1.72034 1.35699 1.22157 1.36010 0.95228 1.09395 0.91640 1.28322 0.93357 0.95604 1.02187 1.70558 1.33694 1.08636 1.31311 0.81870 0.75260 0.70839 0.72591 1.23760 1.22326 1.21824 1.21675 0.93577 0.97722 0.91192 0.95568 0.91610 0.89068 0.88142 0.95465 0.90996 0.89213 0.92890 0.93254 0.90511 0.96466 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.62 127.69 1.23 1.82 16 2 N -0.55 -16.92 4.91 -922.59 -4.53 -21.44 16 3 C 0.05 1.44 5.46 86.32 0.47 1.91 16 4 C -0.11 -2.99 6.09 30.64 0.19 -2.80 16 5 C -0.10 -3.81 4.86 30.67 0.15 -3.67 16 6 C -0.11 -4.69 2.56 -11.48 -0.03 -4.72 16 7 H 0.08 3.33 8.12 -2.39 -0.02 3.31 16 8 C 0.35 18.86 5.86 26.37 0.15 19.01 16 9 O -0.61 -34.90 11.60 -3.52 -0.04 -34.94 16 10 C -0.60 -33.89 9.65 23.50 0.23 -33.66 16 11 H 0.07 3.71 8.06 -2.91 -0.02 3.69 16 12 C 0.02 1.36 5.53 85.43 0.47 1.83 16 13 N -0.82 -46.07 13.64 21.91 0.30 -45.77 16 14 Si 1.16 60.19 25.97 68.60 1.78 61.97 16 15 H -0.31 -14.81 7.11 99.48 0.71 -14.10 16 16 H -0.29 -15.89 6.77 99.48 0.67 -15.21 16 17 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 18 C 0.09 3.34 4.73 86.33 0.41 3.75 16 19 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 20 H 0.07 1.59 8.02 -2.38 -0.02 1.57 16 21 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 22 H 0.10 2.04 8.12 -2.39 -0.02 2.02 16 23 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 1.98 7.79 -2.39 -0.02 1.96 16 28 H 0.28 15.41 8.72 -92.71 -0.81 14.60 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 2.57 8.04 -2.39 -0.02 2.55 16 Total: -1.00 -62.83 245.32 1.80 -61.02 By element: Atomic # 1 Polarization: -5.34 SS G_CDS: 1.02 Total: -4.31 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 3.27 Total: -16.52 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: -4.23 Total: -67.22 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.04 Total: -34.94 kcal Atomic # 14 Polarization: 60.19 SS G_CDS: 1.78 Total: 61.97 kcal Total: -62.83 1.80 -61.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259054825.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.147 kcal (2) G-P(sol) polarization free energy of solvation -62.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds