Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47907 * 110.99403 * 2 1 4 4 C 1.53996 * 107.05271 * 145.84445 * 3 2 1 5 5 C 1.54587 * 105.14375 * 358.77337 * 4 3 2 6 6 H 1.08998 * 110.72868 * 96.58141 * 5 4 3 7 7 C 1.50705 * 110.72640 * 219.68632 * 5 4 3 8 8 O 1.20765 * 119.99663 * 27.54696 * 7 5 4 9 9 C 1.50698 * 120.00412 * 207.54998 * 7 5 4 10 10 C 1.50697 * 109.46993 * 179.97438 * 9 7 5 11 11 H 1.07991 * 120.00449 * 359.72131 * 10 9 7 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 C 1.48733 * 111.04244 * 117.57520 * 2 1 3 19 19 H 1.08996 * 109.46994 * 60.13145 * 1 2 3 20 20 H 1.09002 * 109.46668 * 180.12160 * 1 2 3 21 21 H 1.08993 * 109.47104 * 300.12465 * 1 2 3 22 22 H 1.08997 * 109.92106 * 26.49179 * 3 2 1 23 23 H 1.09004 * 109.91531 * 265.19046 * 3 2 1 24 24 H 1.09002 * 110.30589 * 239.85008 * 4 3 2 25 25 H 1.09004 * 110.39344 * 117.73563 * 4 3 2 26 26 H 1.08998 * 109.47083 * 59.99383 * 9 7 5 27 27 H 1.09001 * 109.46875 * 299.99646 * 9 7 5 28 28 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 29 29 H 1.08993 * 110.83958 * 81.96903 * 18 2 1 30 30 H 1.08999 * 110.58122 * 318.77050 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3809 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4491 -0.0927 1.3154 6 1 4.1141 -0.6530 0.6581 7 6 3.9512 -0.1300 2.7359 8 8 3.7164 0.7889 3.4835 9 6 4.7462 -1.3138 3.2234 10 6 5.1254 -1.1041 4.6667 11 1 4.8251 -0.2018 5.1784 12 6 5.8603 -2.0621 5.3325 13 7 6.2257 -3.1612 4.7095 14 14 6.3370 -1.7988 7.1194 15 1 5.8084 -0.4917 7.5852 16 1 5.7653 -2.8889 7.9500 17 1 7.8169 -1.8063 7.2431 18 6 2.0031 -0.6426 1.2305 19 1 -0.3633 0.5118 -0.8911 20 1 -0.3633 -1.0277 0.0022 21 1 -0.3633 0.5157 0.8888 22 1 1.2757 2.0562 0.4571 23 1 2.2122 1.6968 -1.0212 24 1 3.2135 2.0431 1.6766 25 1 4.1478 1.6462 0.2038 26 1 5.6493 -1.4174 2.6221 27 1 4.1439 -2.2178 3.1332 28 1 6.7424 -3.8353 5.1781 29 1 2.0095 -1.7278 1.1296 30 1 1.4244 -0.3396 2.1030 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259070908.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = -42.789534 kcal Electronic energy + Delta-G solvation = -12464.647289 eV Core-core repulsion = 10259.609305 eV Total energy + Delta-G solvation = -2205.037984 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.44505 -37.37944 -32.95574 -32.04964 -29.64084 -28.35941 -25.79406 -23.87667 -21.34350 -20.80962 -18.38481 -16.40836 -16.07711 -15.50025 -14.74324 -14.36533 -13.90956 -13.62234 -13.30046 -13.12894 -12.72682 -12.01397 -11.51342 -11.45765 -11.37344 -11.19632 -10.87510 -10.73410 -10.60191 -10.37845 -10.01212 -9.28061 -8.51594 -8.45204 -8.27428 -6.06624 -4.07590 2.95698 3.31369 3.38658 3.46402 4.05243 4.44376 4.79558 4.90499 5.00135 5.29413 5.31480 5.36882 5.45477 5.56473 5.72681 5.77786 5.81717 6.00345 6.09648 6.24200 6.37540 6.69728 6.88853 7.03714 7.24169 7.35533 7.92195 8.21175 8.67396 9.02207 9.57645 11.05326 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069564 B = 0.007595 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.410875 B = 3685.797022 C = 3795.623570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.524 5.524 3 C 0.038 3.962 4 C -0.126 4.126 5 C -0.148 4.148 6 H 0.103 0.897 7 C 0.365 3.635 8 O -0.464 6.464 9 C -0.026 4.026 10 C -0.517 4.517 11 H 0.072 0.928 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.053 3.947 19 H 0.066 0.934 20 H 0.069 0.931 21 H 0.027 0.973 22 H 0.043 0.957 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.261 0.739 29 H 0.091 0.909 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.915 4.987 -8.959 12.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.090 4.090 4 C -0.164 4.164 5 C -0.168 4.168 6 H 0.121 0.879 7 C 0.240 3.760 8 O -0.338 6.338 9 C -0.062 4.062 10 C -0.555 4.555 11 H 0.090 0.910 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.725 3.275 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.074 4.074 19 H 0.085 0.915 20 H 0.088 0.912 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.803 5.044 -9.005 12.939 hybrid contribution 0.034 0.320 1.511 1.545 sum -7.769 5.364 -7.494 12.054 Atomic orbital electron populations 1.22505 0.88117 1.02147 1.00536 1.64779 1.07890 1.15033 1.37102 1.22864 0.96101 0.89733 1.00313 1.22420 0.97231 0.96714 1.00006 1.22813 0.97870 0.97380 0.98744 0.87916 1.25102 0.76014 0.88157 0.86704 1.90213 1.48816 1.37464 1.57336 1.19619 0.96114 0.92368 0.98148 1.21239 1.33663 1.05096 0.95545 0.91009 1.25012 0.95821 0.95048 0.98599 1.69970 1.38461 1.08500 1.36867 0.86433 0.78128 0.78310 0.84614 1.19563 1.20960 1.20945 1.23122 0.93172 1.00145 0.90987 0.91505 0.91226 0.95417 0.93885 0.90477 0.90022 0.90932 0.92885 0.92840 0.92925 0.89100 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.40 60.07 0.56 0.74 16 2 N -0.52 -7.29 5.55 -238.54 -1.32 -8.62 16 3 C 0.04 0.50 6.70 -2.75 -0.02 0.48 16 4 C -0.13 -1.90 6.46 -25.38 -0.16 -2.07 16 5 C -0.15 -2.53 3.38 -89.91 -0.30 -2.83 16 6 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 7 C 0.36 7.98 6.30 -29.03 -0.18 7.79 16 8 O -0.46 -11.40 14.80 5.99 0.09 -11.31 16 9 C -0.03 -0.65 5.39 -29.04 -0.16 -0.81 16 10 C -0.52 -14.94 8.92 -34.44 -0.31 -15.25 16 11 H 0.07 2.14 6.76 -52.49 -0.35 1.79 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 14 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.05 0.83 6.02 -1.78 -0.01 0.82 16 19 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 21 H 0.03 0.32 8.01 -51.93 -0.42 -0.10 16 22 H 0.04 0.54 7.73 -51.93 -0.40 0.14 16 23 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.08 1.37 6.86 -51.93 -0.36 1.01 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 0.81 7.87 -51.93 -0.41 0.40 16 LS Contribution 253.19 15.07 3.82 3.82 Total: -1.00 -30.95 253.19 -6.83 -37.78 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -4.45 Total: -3.36 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -0.68 Total: -9.61 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.59 Total: -34.35 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.95 -6.83 -37.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259070908.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.006 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds