Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.47907 * 110.99403 * 2 1 4 4 C 1.53996 * 107.05271 * 145.84445 * 3 2 1 5 5 C 1.54587 * 105.14375 * 358.77337 * 4 3 2 6 6 H 1.08998 * 110.72868 * 96.58141 * 5 4 3 7 7 C 1.50705 * 110.72640 * 219.68632 * 5 4 3 8 8 O 1.20765 * 119.99663 * 27.54696 * 7 5 4 9 9 C 1.50698 * 120.00412 * 207.54998 * 7 5 4 10 10 C 1.50697 * 109.46993 * 179.97438 * 9 7 5 11 11 H 1.07991 * 120.00449 * 359.72131 * 10 9 7 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99913 * 359.72095 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.72528 * 12 10 9 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00108 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99667 * 14 12 10 18 18 C 1.48733 * 111.04244 * 117.57520 * 2 1 3 19 19 H 1.08996 * 109.46994 * 60.13145 * 1 2 3 20 20 H 1.09002 * 109.46668 * 180.12160 * 1 2 3 21 21 H 1.08993 * 109.47104 * 300.12465 * 1 2 3 22 22 H 1.08997 * 109.92106 * 26.49179 * 3 2 1 23 23 H 1.09004 * 109.91531 * 265.19046 * 3 2 1 24 24 H 1.09002 * 110.30589 * 239.85008 * 4 3 2 25 25 H 1.09004 * 110.39344 * 117.73563 * 4 3 2 26 26 H 1.08998 * 109.47083 * 59.99383 * 9 7 5 27 27 H 1.09001 * 109.46875 * 299.99646 * 9 7 5 28 28 H 0.97000 * 119.99651 * 180.02562 * 13 12 10 29 29 H 1.08993 * 110.83958 * 81.96903 * 18 2 1 30 30 H 1.08999 * 110.58122 * 318.77050 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3809 0.0000 4 6 3.2982 1.3660 0.8266 5 6 3.4491 -0.0927 1.3154 6 1 4.1141 -0.6530 0.6581 7 6 3.9512 -0.1300 2.7359 8 8 3.7164 0.7889 3.4835 9 6 4.7462 -1.3138 3.2234 10 6 5.1254 -1.1041 4.6667 11 1 4.8251 -0.2018 5.1784 12 6 5.8603 -2.0621 5.3325 13 7 6.2257 -3.1612 4.7095 14 14 6.3370 -1.7988 7.1194 15 1 5.8084 -0.4917 7.5852 16 1 5.7653 -2.8889 7.9500 17 1 7.8169 -1.8063 7.2431 18 6 2.0031 -0.6426 1.2305 19 1 -0.3633 0.5118 -0.8911 20 1 -0.3633 -1.0277 0.0022 21 1 -0.3633 0.5157 0.8888 22 1 1.2757 2.0562 0.4571 23 1 2.2122 1.6968 -1.0212 24 1 3.2135 2.0431 1.6766 25 1 4.1478 1.6462 0.2038 26 1 5.6493 -1.4174 2.6221 27 1 4.1439 -2.2178 3.1332 28 1 6.7424 -3.8353 5.1781 29 1 2.0095 -1.7278 1.1296 30 1 1.4244 -0.3396 2.1030 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259070908.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = -63.910649 kcal Electronic energy + Delta-G solvation = -12465.563169 eV Core-core repulsion = 10259.609305 eV Total energy + Delta-G solvation = -2205.953864 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.94773 -38.85194 -35.13704 -33.30090 -31.38491 -29.87181 -27.01906 -25.72773 -22.83460 -21.95859 -20.00713 -18.54712 -17.51548 -16.86346 -16.60850 -15.82654 -15.44457 -15.12772 -14.76517 -14.49538 -14.05075 -13.84714 -13.27289 -12.93542 -12.64268 -12.49168 -12.43620 -12.42404 -12.20189 -11.99945 -11.60479 -11.45557 -10.64975 -10.19900 -9.47936 -8.26877 -6.35880 1.19265 1.37083 1.37948 1.52209 2.38035 2.89888 3.07354 3.50161 3.63398 3.68330 4.16058 4.24410 4.40754 4.51964 4.54767 4.68060 4.74474 4.89432 4.95800 4.99307 5.04556 5.13689 5.22840 5.29306 5.68490 5.76980 6.01258 6.09294 6.75650 6.87771 7.33525 8.84971 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069564 B = 0.007595 C = 0.007375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 402.410875 B = 3685.797022 C = 3795.623570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.527 5.527 3 C 0.041 3.959 4 C -0.124 4.124 5 C -0.141 4.141 6 H 0.116 0.884 7 C 0.372 3.628 8 O -0.495 6.495 9 C -0.029 4.029 10 C -0.546 4.546 11 H 0.054 0.946 12 C 0.010 3.990 13 N -0.924 5.924 14 Si 0.962 3.038 15 H -0.274 1.274 16 H -0.272 1.272 17 H -0.272 1.272 18 C 0.056 3.944 19 H 0.087 0.913 20 H 0.077 0.923 21 H 0.024 0.976 22 H 0.048 0.952 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.090 0.910 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.267 0.733 29 H 0.097 0.903 30 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.401 5.255 -9.746 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.251 5.251 3 C -0.086 4.086 4 C -0.162 4.162 5 C -0.161 4.161 6 H 0.134 0.866 7 C 0.250 3.750 8 O -0.371 6.371 9 C -0.066 4.066 10 C -0.584 4.584 11 H 0.072 0.928 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.787 3.213 15 H -0.199 1.199 16 H -0.197 1.197 17 H -0.197 1.197 18 C -0.072 4.072 19 H 0.106 0.894 20 H 0.096 0.904 21 H 0.043 0.957 22 H 0.067 0.933 23 H 0.119 0.881 24 H 0.080 0.920 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.296 5.305 -9.811 13.900 hybrid contribution 0.180 0.223 1.737 1.761 sum -8.116 5.528 -8.073 12.712 Atomic orbital electron populations 1.22608 0.86427 1.03048 1.01411 1.64826 1.09515 1.15311 1.35458 1.22914 0.94940 0.89565 1.01229 1.22437 0.99344 0.94545 0.99893 1.22692 0.98940 0.99523 0.94940 0.86562 1.25118 0.74841 0.86226 0.88830 1.90199 1.49906 1.38103 1.58898 1.19565 0.96373 0.93919 0.96696 1.21486 1.34571 1.04820 0.97511 0.92788 1.25813 0.95512 0.94674 1.02907 1.70045 1.38705 1.09070 1.38575 0.85443 0.78279 0.78192 0.79432 1.19900 1.19730 1.19721 1.23076 0.91863 1.00687 0.91534 0.89413 0.90438 0.95687 0.93313 0.88124 0.92019 0.89144 0.93641 0.93513 0.92375 0.88453 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.40 127.69 1.20 1.47 16 2 N -0.53 -13.33 5.55 -908.59 -5.04 -18.37 16 3 C 0.04 0.97 6.70 86.45 0.58 1.55 16 4 C -0.12 -3.56 6.46 31.47 0.20 -3.36 16 5 C -0.14 -4.68 3.38 -10.33 -0.03 -4.72 16 6 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 7 C 0.37 16.50 6.30 29.10 0.18 16.69 16 8 O -0.50 -24.85 14.80 -1.47 -0.02 -24.87 16 9 C -0.03 -1.48 5.39 29.10 0.16 -1.33 16 10 C -0.55 -32.22 8.92 25.60 0.23 -31.99 16 11 H 0.05 3.32 6.76 -2.92 -0.02 3.30 16 12 C 0.01 0.56 5.46 84.66 0.46 1.02 16 13 N -0.92 -54.60 13.29 21.45 0.28 -54.31 16 14 Si 0.96 45.31 29.54 68.60 2.03 47.34 16 15 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 C 0.06 1.69 6.02 86.61 0.52 2.21 16 19 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 21 H 0.02 0.52 8.01 -2.39 -0.02 0.50 16 22 H 0.05 1.11 7.73 -2.39 -0.02 1.09 16 23 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 24 H 0.06 2.03 6.86 -2.39 -0.02 2.02 16 25 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 26 H 0.05 2.39 8.14 -2.39 -0.02 2.38 16 27 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 29 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.03 1.12 7.87 -2.39 -0.02 1.10 16 Total: -1.00 -65.84 253.19 1.85 -63.98 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.10 Total: 4.68 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.50 Total: -18.46 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -4.75 Total: -72.68 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.02 Total: -24.87 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -65.84 1.85 -63.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259070908.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.073 kcal (2) G-P(sol) polarization free energy of solvation -65.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds