Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46900 * 110.99895 * 2 1 4 4 C 1.50692 * 109.47422 * 66.04220 * 3 2 1 5 5 O 1.21441 * 120.00210 * 0.02562 * 4 3 2 6 6 C 1.41031 * 120.00508 * 179.97438 * 4 3 2 7 7 H 1.07997 * 119.99643 * 0.02562 * 6 4 3 8 8 C 1.40452 * 120.00167 * 179.97438 * 6 4 3 9 9 N 1.30524 * 120.00407 * 0.02562 * 8 6 4 10 10 Si 1.86803 * 119.99803 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46942 * 60.00778 * 10 8 6 12 12 H 1.48509 * 109.47104 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47272 * 300.00333 * 10 8 6 14 14 C 1.46900 * 111.00247 * 236.04630 * 2 1 3 15 15 C 1.53786 * 113.61132 * 303.95175 * 14 2 1 16 16 C 1.53781 * 87.17350 * 220.06309 * 15 14 2 17 17 C 1.53782 * 87.08260 * 25.39213 * 16 15 14 18 18 H 1.08997 * 109.47011 * 183.95344 * 1 2 3 19 19 H 1.08997 * 109.47609 * 303.95844 * 1 2 3 20 20 H 1.09007 * 109.46799 * 63.95577 * 1 2 3 21 21 H 1.09007 * 109.47031 * 186.04410 * 3 2 1 22 22 H 1.08997 * 109.47011 * 306.04127 * 3 2 1 23 23 H 0.96996 * 120.00239 * 179.97438 * 9 8 6 24 24 H 1.08993 * 112.91001 * 75.20326 * 14 2 1 25 25 H 1.09002 * 113.61357 * 105.47226 * 15 14 2 26 26 H 1.09002 * 113.61608 * 334.65388 * 15 14 2 27 27 H 1.09001 * 113.61695 * 139.93969 * 16 15 14 28 28 H 1.08997 * 113.61223 * 270.84552 * 16 15 14 29 29 H 1.08997 * 113.61668 * 89.11298 * 17 16 15 30 30 H 1.08998 * 113.61674 * 219.93807 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0472 1.2983 5 8 1.0045 1.4447 2.1421 6 6 2.0365 3.3790 1.5341 7 1 2.5991 3.9147 0.7839 8 6 1.7018 4.0089 2.7440 9 7 1.0213 3.3617 3.6504 10 14 2.2318 5.7727 3.0565 11 1 1.6456 6.6572 2.0174 12 1 1.7571 6.2022 4.3965 13 1 3.7131 5.8612 3.0036 14 6 1.9955 -0.7660 -1.1376 15 6 1.4815 -2.2142 -1.1957 16 6 2.9040 -2.6217 -1.6147 17 6 3.3950 -1.3576 -0.8894 18 1 -0.3633 -1.0252 0.0709 19 1 -0.3634 0.5740 0.8523 20 1 -0.3633 0.4512 -0.9234 21 1 3.0798 1.3444 -0.1082 22 1 1.5611 1.9273 -0.8309 23 1 0.7905 3.7966 4.4861 24 1 1.9082 -0.2334 -2.0845 25 1 0.7334 -2.3813 -1.9706 26 1 1.1818 -2.6105 -0.2255 27 1 3.2457 -3.5492 -1.1553 28 1 3.0655 -2.5973 -2.6924 29 1 3.6189 -1.5184 0.1651 30 1 4.1926 -0.8339 -1.4164 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259106479.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -17.051077 kcal Electronic energy + Delta-G solvation = -12637.159588 eV Core-core repulsion = 10433.237708 eV Total energy + Delta-G solvation = -2203.921880 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.89182 -36.72809 -33.91750 -32.41220 -28.26263 -26.33901 -25.20119 -24.79579 -21.91804 -19.19208 -18.90158 -16.28364 -15.58863 -15.32493 -14.74467 -14.02927 -13.79607 -13.26805 -12.54089 -12.35732 -12.18268 -11.90294 -11.44899 -11.21835 -11.10287 -10.89403 -10.58679 -10.32435 -10.23349 -10.12401 -9.98842 -9.82851 -8.82816 -7.61975 -7.12737 -6.12273 -4.82128 3.10319 3.16323 3.18492 4.06950 4.32063 4.69805 4.90866 5.00840 5.18337 5.26408 5.51549 5.77449 5.87461 6.05734 6.11429 6.14181 6.18317 6.26594 6.47622 6.50886 6.62405 6.72558 6.85244 6.99033 7.31529 7.83753 7.98444 8.13846 8.90435 8.99204 10.43750 10.68825 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.073442 B = 0.008161 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.161153 B = 3429.923679 C = 3607.551523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.510 5.510 3 C 0.016 3.984 4 C 0.369 3.631 5 O -0.525 6.525 6 C -0.541 4.541 7 H 0.066 0.934 8 C 0.085 3.915 9 N -0.743 5.743 10 Si 0.904 3.096 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.266 1.266 14 C 0.049 3.951 15 C -0.129 4.129 16 C -0.143 4.143 17 C -0.126 4.126 18 H 0.052 0.948 19 H 0.095 0.905 20 H 0.004 0.996 21 H 0.072 0.928 22 H 0.030 0.970 23 H 0.272 0.728 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -5.121 -7.895 9.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.234 5.234 3 C -0.113 4.113 4 C 0.262 3.738 5 O -0.412 6.412 6 C -0.573 4.573 7 H 0.084 0.916 8 C -0.138 4.138 9 N -0.371 5.371 10 Si 0.728 3.272 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.190 1.190 14 C -0.060 4.060 15 C -0.167 4.167 16 C -0.181 4.181 17 C -0.164 4.164 18 H 0.071 0.929 19 H 0.113 0.887 20 H 0.022 0.978 21 H 0.090 0.910 22 H 0.048 0.952 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.911 -5.692 -6.899 9.146 hybrid contribution 0.133 1.437 -0.868 1.684 sum 2.044 -4.255 -7.767 9.089 Atomic orbital electron populations 1.22420 0.87637 1.01092 1.00835 1.62033 1.07917 1.14343 1.39086 1.22646 0.99484 0.87673 1.01498 1.19398 0.81427 0.87698 0.85301 1.90359 1.38816 1.66425 1.45640 1.20725 1.34904 0.99662 1.02034 0.91589 1.25958 0.93152 0.99191 0.95486 1.69943 1.25761 1.36450 1.04985 0.86491 0.79924 0.82712 0.78060 1.19122 1.20387 1.19046 1.23214 0.96452 0.93508 0.92848 1.22956 0.96142 0.95992 1.01623 1.22722 0.97272 0.98230 0.99832 1.22966 0.96062 0.95914 1.01425 0.92922 0.88658 0.97762 0.90967 0.95234 0.91684 0.92881 0.92343 0.89341 0.91546 0.90791 0.89177 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 8.97 60.06 0.54 1.12 16 2 N -0.51 -10.94 4.46 -235.24 -1.05 -11.99 16 3 C 0.02 0.36 5.29 -4.98 -0.03 0.34 16 4 C 0.37 10.49 6.60 -33.25 -0.22 10.27 16 5 O -0.53 -16.58 12.86 5.42 0.07 -16.52 16 6 C -0.54 -15.27 9.22 -37.69 -0.35 -15.62 16 7 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 8 C 0.08 2.33 5.50 -17.27 -0.10 2.24 16 9 N -0.74 -21.76 11.72 55.57 0.65 -21.11 16 10 Si 0.90 19.77 29.56 -169.99 -5.03 14.74 16 11 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 13 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 14 C 0.05 0.83 3.21 -66.80 -0.21 0.62 16 15 C -0.13 -1.87 6.60 -25.92 -0.17 -2.04 16 16 C -0.14 -1.80 8.08 -25.92 -0.21 -2.01 16 17 C -0.13 -1.92 7.68 -25.82 -0.20 -2.12 16 18 H 0.05 0.97 7.04 -51.93 -0.37 0.60 16 19 H 0.09 2.34 5.82 -51.93 -0.30 2.04 16 20 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 21 H 0.07 1.59 7.92 -51.92 -0.41 1.18 16 22 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 23 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.09 1.36 7.88 -51.93 -0.41 0.95 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 250.99 15.07 3.78 3.78 Total: -1.00 -31.55 250.99 -6.93 -38.48 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.42 Total: -0.19 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.94 Total: -7.20 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: -0.40 Total: -33.10 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.07 Total: -16.52 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.03 Total: 14.74 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.55 -6.93 -38.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259106479.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.426 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds