Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00058 * 2 1 4 4 C 1.53006 * 109.46995 * 270.00039 * 3 2 1 5 5 C 1.50698 * 109.47184 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47510 * 119.99847 * 9 7 5 12 12 H 1.48506 * 109.47246 * 239.99882 * 9 7 5 13 13 C 1.34779 * 119.99726 * 179.97438 * 2 1 3 14 14 O 1.21283 * 119.99426 * 180.02562 * 13 2 1 15 15 C 1.50690 * 120.00123 * 359.97438 * 13 2 1 16 16 C 1.53002 * 117.50012 * 248.62016 * 15 13 2 17 17 C 1.52993 * 60.00133 * 252.50998 * 16 15 13 18 18 H 1.09001 * 109.46957 * 89.99817 * 1 2 3 19 19 H 1.08996 * 109.47199 * 210.00336 * 1 2 3 20 20 H 1.09003 * 109.46945 * 330.00267 * 1 2 3 21 21 H 1.09001 * 109.47464 * 150.00300 * 3 2 1 22 22 H 1.09001 * 109.47459 * 30.00015 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99701 * 4 3 2 24 24 H 1.08993 * 109.46955 * 60.00138 * 4 3 2 25 25 H 0.96996 * 120.00505 * 179.97438 * 8 7 5 26 26 H 1.09003 * 115.55407 * 34.33148 * 15 13 2 27 27 H 1.08997 * 117.50134 * 0.02562 * 16 15 13 28 28 H 1.09000 * 117.49738 * 145.02240 * 16 15 13 29 29 H 1.08997 * 117.50354 * 252.50354 * 17 16 15 30 30 H 1.09002 * 117.51304 * 107.48102 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2066 3.0151 -1.4426 6 1 3.4765 3.4828 -0.5073 7 6 3.5509 3.6123 -2.6367 8 7 3.2217 3.0431 -3.7756 9 14 4.4849 5.2300 -2.6367 10 1 4.7324 5.6588 -1.2366 11 1 5.7823 5.0526 -3.3372 12 1 3.6822 6.2651 -3.3363 13 6 2.1389 -1.1672 0.0005 14 8 3.3517 -1.1672 0.0010 15 6 1.3854 -2.4722 0.0017 16 6 1.4611 -3.3306 1.2660 17 6 2.2074 -3.7627 0.0023 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 -0.8899 0.5139 20 1 -0.3633 0.8900 0.5138 21 1 3.1500 1.1384 0.5138 22 1 1.6085 2.0284 0.5138 23 1 3.0416 0.9507 -1.9564 24 1 1.5001 1.8407 -1.9563 25 1 3.4636 3.4634 -4.6156 26 1 0.4468 -2.4738 -0.5526 27 1 2.0555 -2.9512 2.0971 28 1 0.5721 -3.8968 1.5438 29 1 1.8096 -4.6132 -0.5513 30 1 3.2933 -3.6676 0.0015 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259283552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = -18.892132 kcal Electronic energy + Delta-G solvation = -12387.268689 eV Core-core repulsion = 10183.266974 eV Total energy + Delta-G solvation = -2204.001715 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.61350 -36.26975 -35.08963 -33.02783 -30.07473 -26.42529 -25.57484 -23.19160 -22.38328 -20.79269 -18.48001 -17.07153 -16.46012 -15.37735 -15.05477 -14.56844 -14.23544 -13.60574 -12.66340 -12.59482 -12.33836 -12.29359 -11.87956 -11.49143 -11.28199 -10.92984 -10.66182 -10.53755 -10.39203 -9.85353 -9.82208 -9.38658 -9.04690 -8.33542 -7.94716 -5.98445 -4.01434 2.90869 3.33088 3.39899 3.44025 3.54238 4.00553 4.48410 4.74969 4.88378 4.97141 5.25039 5.37693 5.42330 5.57038 5.71901 5.76743 5.95022 5.99435 6.17178 6.20720 6.56749 6.90036 7.00588 7.65142 7.75998 8.02018 8.02857 8.39454 8.72469 9.05763 9.62266 11.13206 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065161 B = 0.007426 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.604435 B = 3769.464448 C = 3878.547247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.609 5.609 3 C 0.118 3.882 4 C 0.012 3.988 5 C -0.519 4.519 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.536 3.464 14 O -0.540 6.540 15 C -0.190 4.190 16 C -0.156 4.156 17 C -0.151 4.151 18 H 0.054 0.946 19 H 0.065 0.935 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.021 0.979 24 H 0.016 0.984 25 H 0.260 0.740 26 H 0.121 0.879 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 -9.745 8.056 14.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.342 5.342 3 C -0.003 4.003 4 C -0.026 4.026 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.323 3.677 14 O -0.417 6.417 15 C -0.211 4.211 16 C -0.194 4.194 17 C -0.188 4.188 18 H 0.073 0.927 19 H 0.083 0.917 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.081 0.919 23 H 0.039 0.961 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.139 0.861 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.762 -9.685 7.878 14.198 hybrid contribution 0.268 0.995 -0.299 1.074 sum -6.494 -8.689 7.578 13.233 Atomic orbital electron populations 1.21725 0.80439 1.02291 1.01710 1.47976 1.06723 1.06937 1.72520 1.21883 0.95617 0.81301 1.01518 1.19387 0.97006 0.96341 0.89834 1.21150 1.36097 1.06089 0.92498 0.92473 1.25009 0.96007 0.97782 0.95581 1.69985 1.46916 1.39157 0.97259 0.86497 0.79659 0.83495 0.78110 1.19671 1.20958 1.21023 1.19547 0.87377 0.84314 0.76455 1.90684 1.13856 1.87167 1.50033 1.22264 1.02566 0.91403 1.04882 1.22885 1.02998 1.01911 0.91570 1.22919 1.00229 0.95573 1.00072 0.92749 0.91659 0.91208 0.91050 0.91860 0.96058 0.96614 0.93039 0.86125 0.88455 0.88167 0.88225 0.87461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.05 59.85 0.60 1.73 16 2 N -0.61 -11.46 2.87 -181.57 -0.52 -11.98 16 3 C 0.12 2.61 5.39 -4.04 -0.02 2.58 16 4 C 0.01 0.33 5.30 -27.88 -0.15 0.19 16 5 C -0.52 -15.18 9.11 -34.44 -0.31 -15.49 16 6 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -27.68 13.29 55.43 0.74 -26.95 16 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.54 10.33 7.46 -10.99 -0.08 10.25 16 14 O -0.54 -12.73 15.84 5.55 0.09 -12.64 16 15 C -0.19 -2.64 4.80 -91.78 -0.44 -3.08 16 16 C -0.16 -1.74 10.23 -26.73 -0.27 -2.01 16 17 C -0.15 -1.87 10.04 -26.73 -0.27 -2.14 16 18 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 19 H 0.06 0.70 6.64 -51.93 -0.34 0.35 16 20 H 0.07 0.87 7.89 -51.93 -0.41 0.46 16 21 H 0.07 1.69 7.42 -51.93 -0.39 1.30 16 22 H 0.06 1.27 7.89 -51.93 -0.41 0.86 16 23 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.12 1.42 7.26 -51.93 -0.38 1.04 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.11 1.54 7.67 -51.93 -0.40 1.14 16 LS Contribution 260.37 15.07 3.92 3.92 Total: -1.00 -34.06 260.37 -6.24 -40.31 By element: Atomic # 1 Polarization: 1.02 SS G_CDS: -4.40 Total: -3.39 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -1.04 Total: -6.39 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.21 Total: -38.93 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -34.06 -6.24 -40.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259283552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.413 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds