Wall clock time and date at job start Mon Mar 30 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00058 * 2 1 4 4 C 1.53006 * 109.46995 * 270.00039 * 3 2 1 5 5 C 1.50698 * 109.47184 * 180.02562 * 4 3 2 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47309 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47510 * 119.99847 * 9 7 5 12 12 H 1.48506 * 109.47246 * 239.99882 * 9 7 5 13 13 C 1.34779 * 119.99726 * 179.97438 * 2 1 3 14 14 O 1.21283 * 119.99426 * 180.02562 * 13 2 1 15 15 C 1.50690 * 120.00123 * 359.97438 * 13 2 1 16 16 C 1.53002 * 117.50012 * 248.62016 * 15 13 2 17 17 C 1.52993 * 60.00133 * 252.50998 * 16 15 13 18 18 H 1.09001 * 109.46957 * 89.99817 * 1 2 3 19 19 H 1.08996 * 109.47199 * 210.00336 * 1 2 3 20 20 H 1.09003 * 109.46945 * 330.00267 * 1 2 3 21 21 H 1.09001 * 109.47464 * 150.00300 * 3 2 1 22 22 H 1.09001 * 109.47459 * 30.00015 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99701 * 4 3 2 24 24 H 1.08993 * 109.46955 * 60.00138 * 4 3 2 25 25 H 0.96996 * 120.00505 * 179.97438 * 8 7 5 26 26 H 1.09003 * 115.55407 * 34.33148 * 15 13 2 27 27 H 1.08997 * 117.50134 * 0.02562 * 16 15 13 28 28 H 1.09000 * 117.49738 * 145.02240 * 16 15 13 29 29 H 1.08997 * 117.50354 * 252.50354 * 17 16 15 30 30 H 1.09002 * 117.51304 * 107.48102 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 6 3.2066 3.0151 -1.4426 6 1 3.4765 3.4828 -0.5073 7 6 3.5509 3.6123 -2.6367 8 7 3.2217 3.0431 -3.7756 9 14 4.4849 5.2300 -2.6367 10 1 4.7324 5.6588 -1.2366 11 1 5.7823 5.0526 -3.3372 12 1 3.6822 6.2651 -3.3363 13 6 2.1389 -1.1672 0.0005 14 8 3.3517 -1.1672 0.0010 15 6 1.3854 -2.4722 0.0017 16 6 1.4611 -3.3306 1.2660 17 6 2.2074 -3.7627 0.0023 18 1 -0.3633 0.0000 -1.0277 19 1 -0.3633 -0.8899 0.5139 20 1 -0.3633 0.8900 0.5138 21 1 3.1500 1.1384 0.5138 22 1 1.6085 2.0284 0.5138 23 1 3.0416 0.9507 -1.9564 24 1 1.5001 1.8407 -1.9563 25 1 3.4636 3.4634 -4.6156 26 1 0.4468 -2.4738 -0.5526 27 1 2.0555 -2.9512 2.0971 28 1 0.5721 -3.8968 1.5438 29 1 1.8096 -4.6132 -0.5513 30 1 3.2933 -3.6676 0.0015 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259283552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:51 Heat of formation + Delta-G solvation = -41.805836 kcal Electronic energy + Delta-G solvation = -12388.262302 eV Core-core repulsion = 10183.266974 eV Total energy + Delta-G solvation = -2204.995327 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.05252 -37.52666 -36.62463 -35.16721 -32.07013 -27.88930 -27.26627 -24.86908 -23.30021 -22.60812 -19.88034 -18.68696 -18.34168 -16.94648 -16.71506 -16.18457 -15.65860 -15.00152 -14.57194 -14.33501 -13.91163 -13.51712 -13.36883 -13.11245 -12.86760 -12.57079 -12.39747 -11.95746 -11.84591 -11.52114 -11.44516 -11.34270 -10.75946 -10.62117 -9.55662 -8.25102 -6.38159 1.37602 1.39613 1.51587 1.53898 2.12667 2.40248 2.94386 3.08176 3.59215 3.85008 4.02081 4.20194 4.36058 4.40125 4.56160 4.73487 4.74436 4.88901 4.91617 4.94202 5.04572 5.24998 5.30126 5.46147 5.58325 5.80676 6.14977 6.51640 6.77688 7.24076 7.31782 8.87590 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.065161 B = 0.007426 C = 0.007217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.604435 B = 3769.464448 C = 3878.547247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.615 5.615 3 C 0.131 3.869 4 C 0.024 3.976 5 C -0.545 4.545 6 H 0.065 0.935 7 C -0.002 4.002 8 N -0.934 5.934 9 Si 0.973 3.027 10 H -0.259 1.259 11 H -0.281 1.281 12 H -0.272 1.272 13 C 0.521 3.479 14 O -0.599 6.599 15 C -0.203 4.203 16 C -0.126 4.126 17 C -0.157 4.157 18 H 0.053 0.947 19 H 0.105 0.895 20 H 0.084 0.916 21 H 0.049 0.951 22 H 0.089 0.911 23 H -0.029 1.029 24 H 0.000 1.000 25 H 0.265 0.735 26 H 0.150 0.850 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.132 0.868 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.942 -9.864 9.178 16.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.345 5.345 3 C 0.009 3.991 4 C -0.014 4.014 5 C -0.583 4.583 6 H 0.084 0.916 7 C -0.200 4.200 8 N -0.574 5.574 9 Si 0.797 3.203 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.197 1.197 13 C 0.311 3.689 14 O -0.481 6.481 15 C -0.224 4.224 16 C -0.164 4.164 17 C -0.194 4.194 18 H 0.071 0.929 19 H 0.123 0.877 20 H 0.103 0.897 21 H 0.068 0.932 22 H 0.108 0.892 23 H -0.010 1.010 24 H 0.018 0.982 25 H 0.073 0.927 26 H 0.168 0.832 27 H 0.104 0.896 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.343 -9.815 9.017 15.724 hybrid contribution 0.733 0.987 -0.666 1.398 sum -7.610 -8.828 8.351 14.338 Atomic orbital electron populations 1.22051 0.76994 1.05075 1.02503 1.48092 1.08873 1.05642 1.71931 1.21449 0.95957 0.83865 0.97867 1.19195 0.95027 0.94661 0.92489 1.21600 1.36651 1.06939 0.93155 0.91646 1.26060 0.96837 1.02059 0.94999 1.70124 1.48037 1.41173 0.98109 0.85283 0.77932 0.78293 0.78816 1.18268 1.20665 1.19691 1.20634 0.87156 0.86174 0.74928 1.90645 1.16650 1.88180 1.52621 1.22271 1.03274 0.88658 1.08169 1.23043 1.03729 0.99677 0.89911 1.23024 0.98756 0.95719 1.01926 0.92873 0.87698 0.89713 0.93239 0.89239 1.01038 0.98173 0.92656 0.83210 0.89638 0.83871 0.85016 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.89 10.05 127.77 1.28 3.18 16 2 N -0.61 -23.03 2.87 -846.75 -2.43 -25.46 16 3 C 0.13 5.94 5.39 86.38 0.47 6.40 16 4 C 0.02 1.38 5.30 29.85 0.16 1.54 16 5 C -0.55 -32.51 9.11 25.60 0.23 -32.27 16 6 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 8 N -0.93 -59.20 13.29 21.45 0.28 -58.91 16 9 Si 0.97 45.60 29.54 68.60 2.03 47.62 16 10 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.52 20.33 7.46 87.65 0.65 20.98 16 14 O -0.60 -29.77 15.84 -3.04 -0.05 -29.81 16 15 C -0.20 -5.24 4.80 -11.54 -0.06 -5.29 16 16 C -0.13 -2.40 10.23 30.59 0.31 -2.09 16 17 C -0.16 -3.64 10.04 30.59 0.31 -3.33 16 18 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 19 H 0.10 1.81 6.64 -2.39 -0.02 1.80 16 20 H 0.08 1.88 7.89 -2.39 -0.02 1.86 16 21 H 0.05 2.43 7.42 -2.39 -0.02 2.42 16 22 H 0.09 3.54 7.89 -2.39 -0.02 3.52 16 23 H -0.03 -1.90 8.14 -2.39 -0.02 -1.92 16 24 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 25 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 26 H 0.15 2.97 7.26 -2.39 -0.02 2.96 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.08 2.27 7.67 -2.39 -0.02 2.25 16 Total: -1.00 -78.07 260.37 4.76 -73.32 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.10 Total: 3.79 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 3.82 Total: -10.54 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -2.15 Total: -84.38 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.05 Total: -29.81 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -78.07 4.76 -73.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259283552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.512 kcal (2) G-P(sol) polarization free energy of solvation -78.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds